KEGG   PATHWAY: amex03030
Entry
amex03030                   Pathway                                
Name
DNA replication - Astyanax mexicanus (Mexican tetra)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
amex03030  DNA replication
amex03030

Organism
Astyanax mexicanus (Mexican tetra) [GN:amex]
Gene
103021452  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
103021798  [KO:K10739]
103021994  [KO:K03505]
103023330  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
103023852  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
103024896  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
103025594  rpa2; replication protein A 32 kDa subunit [KO:K10739]
103026008  pola2; DNA polymerase alpha subunit B [KO:K02321]
103027008  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
103027123  pcna; proliferating cell nuclear antigen [KO:K04802]
103027193  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
103027693  mcm3l; MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), like [KO:K02541] [EC:5.6.2.3]
103028131  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
103029225  rpa3; replication protein A 14 kDa subunit [KO:K10740]
103030272  rfc2; replication factor C subunit 2 [KO:K10755]
103031781  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
103031920  rfc3; replication factor C subunit 3 [KO:K10756]
103034183  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
103035285  lig1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
103036595  rfc4; replication factor C subunit 4 [KO:K10755]
103037949  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
103038520  pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
103039249  rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
103039707  rfc5; replication factor C subunit 5 [KO:K10756]
103040169  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
103040955  pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
103041196  prim2; DNA primase large subunit [KO:K02685]
103041632  mcm7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
103041645  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
103042299  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
103043232  pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
103044243  rfc1; replication factor C subunit 1 [KO:K10754]
103044605  pold2; DNA polymerase delta subunit 2 [KO:K02328]
103045108  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
103045251  pold3; DNA polymerase delta subunit 3 [KO:K03504]
103045462  mcm2; DNA replication licensing factor MCM2 isoform X1 [KO:K02540] [EC:5.6.2.3]
111191587  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
111191991  zgc:110269; probable flap endonuclease 1 homolog isoform X1 [KO:K04799] [EC:3.1.-.-]
111194477  mcm6l; MCM6 minichromosome maintenance deficient 6, like [KO:K02542] [EC:5.6.2.3]
125802913  [KO:K03505]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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