KEGG   PATHWAY: amyy03430
Entry
amyy03430                   Pathway                                
Name
Mismatch repair - Amycolatopsis sp. YIM 10
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
amyy03430  Mismatch repair
amyy03430

Other DBs
GO: 0006298
Organism
Amycolatopsis sp. YIM 10 [GN:amyy]
Gene
YIM_00015  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
YIM_01940  dnaX1; DNA polymerase III subunit tau [KO:K02343] [EC:2.7.7.7]
YIM_02440  dnaX2; DNA polymerase III subunit tau [KO:K02341] [EC:2.7.7.7]
YIM_05255  [KO:K03602] [EC:3.1.11.6]
YIM_05265  xseA; Exodeoxyribonuclease 7 large subunit [KO:K03601] [EC:3.1.11.6]
YIM_06670  uvrD1; ATP-dependent DNA helicase UvrD2 [KO:K03657] [EC:5.6.2.4]
YIM_09575  ligA1; DNA ligase [KO:K01972] [EC:6.5.1.2]
YIM_12125  dnaE1; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
YIM_12370  polC; DNA polymerase III PolC-type [KO:K02342] [EC:2.7.7.7]
YIM_21010  ligA2; DNA ligase [KO:K01972] [EC:6.5.1.2]
YIM_27090  [KO:K02342] [EC:2.7.7.7]
YIM_37090  yjcD2; Putative ATP-dependent DNA helicase YjcD [KO:K03657] [EC:5.6.2.4]
YIM_38480  [KO:K02340] [EC:2.7.7.7]
YIM_39120  ssb1; Single-stranded DNA-binding protein [KO:K03111]
YIM_41435  dnaE3; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
YIM_42095  pcrA; ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
YIM_43640  uvrD2; ATP-dependent DNA helicase UvrD1 [KO:K03657] [EC:5.6.2.4]
YIM_47920  ssb2; Single-stranded DNA-binding protein [KO:K03111]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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