KEGG   PATHWAY: apel00020
Entry
apel00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alteromonas pelagimontana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
apel00020  Citrate cycle (TCA cycle)
apel00020

Module
apel_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:apel00020]
apel_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:apel00020]
apel_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:apel00020]
apel_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:apel00020]
apel_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:apel00020]
Other DBs
GO: 0006099
Organism
Alteromonas pelagimontana [GN:apel]
Gene
CA267_018040  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CA267_011430  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CA267_005570  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CA267_017500  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CA267_013805  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CA267_018065  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CA267_018070  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CA267_004000  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CA267_018080  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CA267_018075  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CA267_018055  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CA267_018060  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CA267_018045  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CA267_018050  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CA267_018405  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CA267_016975  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CA267_012720  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CA267_008455  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CA267_004010  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CA267_004005  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
apel00010  Glycolysis / Gluconeogenesis
apel00053  Ascorbate and aldarate metabolism
apel00061  Fatty acid biosynthesis
apel00071  Fatty acid degradation
apel00190  Oxidative phosphorylation
apel00220  Arginine biosynthesis
apel00250  Alanine, aspartate and glutamate metabolism
apel00280  Valine, leucine and isoleucine degradation
apel00350  Tyrosine metabolism
apel00470  D-Amino acid metabolism
apel00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system