KEGG   PATHWAY: apor00020
Entry
apor00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Actinobacillus porcitonsillarum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
apor00020  Citrate cycle (TCA cycle)
apor00020

Module
apor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:apor00020]
apor_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:apor00020]
apor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:apor00020]
Other DBs
GO: 0006099
Organism
Actinobacillus porcitonsillarum [GN:apor]
Gene
DDU33_03960  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DDU33_07275  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DDU33_07270  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DDU33_08820  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DDU33_09915  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DDU33_09910  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DDU33_02595  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
DDU33_02600  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
DDU33_02605  fumarate reductase subunit FrdC [KO:K00246]
DDU33_02610  fumarate reductase subunit FrdD [KO:K00247]
DDU33_02220  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DDU33_05030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DDU33_00650  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
DDU33_08920  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DDU33_08830  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DDU33_08825  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
apor00010  Glycolysis / Gluconeogenesis
apor00053  Ascorbate and aldarate metabolism
apor00061  Fatty acid biosynthesis
apor00071  Fatty acid degradation
apor00190  Oxidative phosphorylation
apor00220  Arginine biosynthesis
apor00250  Alanine, aspartate and glutamate metabolism
apor00280  Valine, leucine and isoleucine degradation
apor00350  Tyrosine metabolism
apor00470  D-Amino acid metabolism
apor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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