KEGG   PATHWAY: asip00020
Entry
asip00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aquicella siphonis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asip00020  Citrate cycle (TCA cycle)
asip00020

Module
asip_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asip00020]
asip_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asip00020]
asip_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asip00020]
asip_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asip00020]
Other DBs
GO: 0006099
Organism
Aquicella siphonis [GN:asip]
Gene
AQUSIP_12470  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
AQUSIP_23880  acnA_2; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AQUSIP_06750  dmdA; 2,3-dimethylmalate dehydratase large subunit [KO:K01681] [EC:4.2.1.3]
AQUSIP_13570  acnA_1; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AQUSIP_14620  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AQUSIP_18470  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AQUSIP_12420  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AQUSIP_12410  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AQUSIP_05650  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AQUSIP_12390  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
AQUSIP_12400  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AQUSIP_12440  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AQUSIP_12430  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AQUSIP_12460  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
AQUSIP_12450  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
AQUSIP_14020  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AQUSIP_20570  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AQUSIP_00310  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
AQUSIP_05630  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AQUSIP_05640  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asip00010  Glycolysis / Gluconeogenesis
asip00053  Ascorbate and aldarate metabolism
asip00061  Fatty acid biosynthesis
asip00071  Fatty acid degradation
asip00190  Oxidative phosphorylation
asip00220  Arginine biosynthesis
asip00250  Alanine, aspartate and glutamate metabolism
asip00280  Valine, leucine and isoleucine degradation
asip00350  Tyrosine metabolism
asip00470  D-Amino acid metabolism
asip00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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