KEGG   PATHWAY: avq00030
Entry
avq00030                    Pathway                                
Name
Pentose phosphate pathway - Agrobacterium vaccinii
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
avq00030  Pentose phosphate pathway
avq00030

Module
avq_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:avq00030]
avq_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:avq00030]
avq_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:avq00030]
avq_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:avq00030]
avq_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:avq00030]
Other DBs
GO: 0006098
Organism
Agrobacterium vaccinii [GN:avq]
Gene
HRR99_01170  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
HRR99_02010  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
HRR99_14745  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
HRR99_02005  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
HRR99_06790  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
HRR99_16355  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
HRR99_08545  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
HRR99_19360  transketolase family protein [KO:K00615] [EC:2.2.1.1]
HRR99_19365  transketolase [KO:K00615] [EC:2.2.1.1]
HRR99_11935  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
HRR99_12680  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
HRR99_08245  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
HRR99_15715  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
HRR99_14770  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
HRR99_20350  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
HRR99_20380  ribokinase [KO:K00852] [EC:2.7.1.15]
HRR99_00220  ribokinase [KO:K00852] [EC:2.7.1.15]
HRR99_00515  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
HRR99_12325  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
HRR99_00330  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
HRR99_10565  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
HRR99_02000  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
HRR99_12585  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
HRR99_13070  glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
HRR99_16475  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
HRR99_00405  gluconokinase [KO:K00851] [EC:2.7.1.12]
HRR99_10920  sugar kinase [KO:K00874] [EC:2.7.1.45]
HRR99_09040  glycerate kinase [KO:K11529] [EC:2.7.1.165]
HRR99_22530  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
HRR99_11975  fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
HRR99_20170  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
HRR99_21930  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
HRR99_10040  pyrophosphate--fructose-6-phosphate 1-phosphotransferase [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
avq00010  Glycolysis / Gluconeogenesis
avq00040  Pentose and glucuronate interconversions
avq00052  Galactose metabolism
avq00230  Purine metabolism
avq00240  Pyrimidine metabolism
avq00340  Histidine metabolism
avq00630  Glyoxylate and dicarboxylate metabolism
avq00750  Vitamin B6 metabolism
KO pathway
ko00030   
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