KEGG   PATHWAY: avq00230
Entry
avq00230                    Pathway                                
Name
Purine metabolism - Agrobacterium vaccinii
Class
Metabolism; Nucleotide metabolism
Pathway map
avq00230  Purine metabolism
avq00230

Module
avq_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:avq00230]
avq_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:avq00230]
avq_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:avq00230]
avq_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:avq00230]
avq_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:avq00230]
avq_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:avq00230]
avq_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:avq00230]
Other DBs
GO: 0006163 0042278
Organism
Agrobacterium vaccinii [GN:avq]
Gene
HRR99_05090  NUDIX domain-containing protein [KO:K01515] [EC:3.6.1.13 3.6.1.-]
HRR99_00515  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
HRR99_12325  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
HRR99_10565  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
HRR99_04810  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
HRR99_02570  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
HRR99_20625  hypothetical protein [KO:K11175] [EC:2.1.2.2]
HRR99_05110  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
HRR99_08600  purL; phosphoribosylformylglycinamidine synthase subunit PurL [KO:K23269] [EC:6.3.5.3]
HRR99_08575  purS; phosphoribosylformylglycinamidine synthase subunit PurS [KO:K23264] [EC:6.3.5.3]
HRR99_08580  purQ; phosphoribosylformylglycinamidine synthase subunit PurQ [KO:K23265] [EC:6.3.5.3 3.5.1.2]
HRR99_05115  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
HRR99_12060  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
HRR99_12055  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
HRR99_08570  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
HRR99_13180  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
HRR99_08550  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
HRR99_14390  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
HRR99_10635  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
HRR99_12225  5'-nucleotidase C-terminal domain-containing protein [KO:K11751] [EC:3.1.3.5 3.6.1.45]
HRR99_06475  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
HRR99_14775  purine-nucleoside phosphorylase [KO:K03783] [EC:2.4.2.1]
HRR99_10550  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
HRR99_18575  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
HRR99_02120  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
HRR99_05015  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
HRR99_00035  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
HRR99_06365  gpt; xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
HRR99_10990  xdhA; xanthine dehydrogenase small subunit [KO:K13481] [EC:1.17.1.4]
HRR99_10995  xdhB; xanthine dehydrogenase molybdopterin binding subunit [KO:K13482] [EC:1.17.1.4]
HRR99_15650  xanthine dehydrogenase family protein molybdopterin-binding subunit [KO:K11177] [EC:1.17.1.4]
HRR99_16730  xanthine dehydrogenase family protein molybdopterin-binding subunit [KO:K11177] [EC:1.17.1.4]
HRR99_15655  xanthine dehydrogenase family protein subunit M [KO:K11178] [EC:1.17.1.4]
HRR99_16735  xanthine dehydrogenase family protein subunit M [KO:K11178] [EC:1.17.1.4]
HRR99_15660  2Fe-2S iron-sulfur cluster binding domain-containing protein [KO:K13483]
HRR99_16740  paoA; aldehyde dehydrogenase iron-sulfur subunit [KO:K13483]
HRR99_00990  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
HRR99_11015  guaD; guanine deaminase [KO:K01487] [EC:3.5.4.3]
HRR99_04925  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
HRR99_22485  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
HRR99_06350  vitamin B12-dependent ribonucleotide reductase [KO:K00525] [EC:1.17.4.1]
HRR99_22480  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
HRR99_06425  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
HRR99_04690  HD family hydrolase [KO:K06952] [EC:3.1.3.89]
HRR99_04585  bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
HRR99_02100  Ppx/GppA family phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
HRR99_05135  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
HRR99_21185  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
HRR99_05145  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
HRR99_13025  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
HRR99_13325  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
HRR99_11535  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
HRR99_00520  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
HRR99_04425  amn; AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
HRR99_10905  ade; adenine deaminase [KO:K01486] [EC:3.5.4.2]
HRR99_12830  adenine deaminase [KO:K01486] [EC:3.5.4.2]
HRR99_05535  bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
HRR99_11905  TIGR00282 family metallophosphoesterase [KO:K09769] [EC:3.1.4.16]
HRR99_05480  adenylate kinase [KO:K00939] [EC:2.7.4.3]
HRR99_11885  nucleoside monophosphate kinase [KO:K00939] [EC:2.7.4.3]
HRR99_07490  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
HRR99_03415  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
HRR99_03420  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
HRR99_11045  uraH; hydroxyisourate hydrolase [KO:K07127] [EC:3.5.2.17]
HRR99_21260  aspartate/glutamate racemase family protein [KO:K16841] [EC:5.1.99.3]
HRR99_15820  amidohydrolase family protein [KO:K01466] [EC:3.5.2.5]
HRR99_11070  puuE; allantoinase PuuE [KO:K16842] [EC:3.5.2.5]
HRR99_21580  (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
HRR99_11050  ureidoglycolate lyase [KO:K01483] [EC:4.3.2.3]
HRR99_15765  ureidoglycolate lyase [KO:K01483] [EC:4.3.2.3]
HRR99_19120  fumarylacetoacetate hydrolase family protein [KO:K16856] [EC:4.3.2.3]
HRR99_11350  ureC; urease subunit alpha [KO:K01428] [EC:3.5.1.5]
HRR99_11360  urease subunit beta [KO:K01429] [EC:3.5.1.5]
HRR99_11370  urease subunit gamma [KO:K01430] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
avq00030  Pentose phosphate pathway
avq00220  Arginine biosynthesis
avq00250  Alanine, aspartate and glutamate metabolism
avq00260  Glycine, serine and threonine metabolism
avq00340  Histidine metabolism
avq00630  Glyoxylate and dicarboxylate metabolism
avq00730  Thiamine metabolism
avq00740  Riboflavin metabolism
avq00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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