KEGG   PATHWAY: axx00020
Entry
axx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Achromobacter xylosoxidans NCTC10807
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
axx00020  Citrate cycle (TCA cycle)
axx00020

Module
axx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:axx00020]
axx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:axx00020]
axx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:axx00020]
axx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:axx00020]
axx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:axx00020]
Other DBs
GO: 0006099
Organism
Achromobacter xylosoxidans NCTC10807 [GN:axx]
Gene
ERS451415_01533  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
ERS451415_05673  citZ_3; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
ERS451415_03232  citZ_1; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
ERS451415_05507  citZ_2; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
ERS451415_04304  citB_1; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ERS451415_05148  citB_2; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ERS451415_04740  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ERS451415_01224  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ERS451415_02963  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ERS451415_01544  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ERS451415_01545  sucB_1; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ERS451415_01546  lpd_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ERS451415_05627  lpd_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ERS451415_02355  lpdV; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ERS451415_02635  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ERS451415_02402  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ERS451415_01752  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
ERS451415_01751  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
ERS451415_04718  scpC; Propionyl-CoA:succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
ERS451415_01530  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ERS451415_01531  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ERS451415_01528  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
ERS451415_01529  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
ERS451415_00885  fumB; Fumarate hydratase class I%2C anaerobic [KO:K01676] [EC:4.2.1.2]
ERS451415_00917  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ERS451415_01526  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ERS451415_02904  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ERS451415_02195  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
ERS451415_01537  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ERS451415_02400  aceE_3; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ERS451415_02180  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ERS451415_05626  sucB_2; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ERS451415_02401  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
axx00010  Glycolysis / Gluconeogenesis
axx00053  Ascorbate and aldarate metabolism
axx00061  Fatty acid biosynthesis
axx00071  Fatty acid degradation
axx00190  Oxidative phosphorylation
axx00220  Arginine biosynthesis
axx00250  Alanine, aspartate and glutamate metabolism
axx00280  Valine, leucine and isoleucine degradation
axx00350  Tyrosine metabolism
axx00470  D-Amino acid metabolism
axx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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