KEGG   PATHWAY: bage00020
Entry
bage00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Buttiauxella agrestis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bage00020  Citrate cycle (TCA cycle)
bage00020

Module
bage_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bage00020]
bage_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bage00020]
bage_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bage00020]
bage_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bage00020]
bage_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bage00020]
Other DBs
GO: 0006099
Organism
Buttiauxella agrestis [GN:bage]
Gene
BADSM9389_12750  citrate synthase [KO:K01647] [EC:2.3.3.1]
BADSM9389_20200  aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
BADSM9389_34270  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BADSM9389_25110  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BADSM9389_12810  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BADSM9389_12820  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
BADSM9389_34300  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BADSM9389_12840  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BADSM9389_12830  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BADSM9389_12790  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BADSM9389_12800  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BADSM9389_12770  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
BADSM9389_12780  succinate dehydrogenase membrane anchor subunit [KO:K00242]
BADSM9389_37420  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BADSM9389_37430  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
BADSM9389_37440  frdC; fumarate reductase subunit FrdC [KO:K00246]
BADSM9389_37450  frdD; fumarate reductase subunit FrdD [KO:K00247]
BADSM9389_22760  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BADSM9389_22750  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BADSM9389_17370  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
BADSM9389_07200  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
BADSM9389_04480  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BADSM9389_02960  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BADSM9389_34320  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BADSM9389_34310  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BADSM9389_21770  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bage00010  Glycolysis / Gluconeogenesis
bage00053  Ascorbate and aldarate metabolism
bage00061  Fatty acid biosynthesis
bage00071  Fatty acid degradation
bage00190  Oxidative phosphorylation
bage00220  Arginine biosynthesis
bage00250  Alanine, aspartate and glutamate metabolism
bage00280  Valine, leucine and isoleucine degradation
bage00350  Tyrosine metabolism
bage00470  D-Amino acid metabolism
bage00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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