KEGG   PATHWAY: bav00630
Entry
bav00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bordetella avium
Class
Metabolism; Carbohydrate metabolism
Pathway map
bav00630  Glyoxylate and dicarboxylate metabolism
bav00630

Module
bav_M00621  Glycine cleavage system [PATH:bav00630]
Other DBs
GO: 0046487 0043648
Organism
Bordetella avium [GN:bav]
Gene
BAV0105  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
BAV0108  [KO:K05825] [EC:2.6.1.-]
BAV0194  [KO:K05825] [EC:2.6.1.-]
BAV0205  [KO:K01091] [EC:3.1.3.18]
BAV0445  katB; catalase [KO:K03781] [EC:1.11.1.6]
BAV0457  hutG; putative N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
BAV0491  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
BAV0492  gcvH; glycine cleavage system H protein [KO:K02437]
BAV0493  gcvP; glycine cleavage system P protein [KO:K00281] [EC:1.4.4.2]
BAV0625  acnA1; aconitate hydratase [KO:K27802]
BAV0697  garK; glycerate kinase [KO:K00865] [EC:2.7.1.165]
BAV0814  fdsD; NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
BAV0816  fdsA; NAD-dependent formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
BAV0817  fdsB; NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
BAV0818  fdsG; NAD-dependent formate dehydrogenase gamma subunit [KO:K00127]
BAV1017  acnA2; aconitate hydratase [KO:K27802]
BAV1110  [KO:K01091] [EC:3.1.3.18]
BAV1149  acs; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
BAV1171  [KO:K01895] [EC:6.2.1.1]
BAV1178  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BAV1180  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BAV1187  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BAV1205  odhL; dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) [KO:K00382] [EC:1.8.1.4]
BAV1222  phbB; acetoacetyl-CoA reductase (short-chain dehydrogenase/reductase) [KO:K00023] [EC:1.1.1.36]
BAV1665  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAV1972  [KO:K00382] [EC:1.8.1.4]
BAV2149  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BAV2150  glcE; glycolate oxidase subunit [KO:K11472] [EC:1.1.99.14]
BAV2151  glcD1; glycolate oxidase subunit [KO:K00104] [EC:1.1.99.14]
BAV2193  [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BAV2205  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BAV2261  fmdA; formamidase [KO:K01455] [EC:3.5.1.49]
BAV2406  [KO:K07130] [EC:3.5.1.9]
BAV2476  [KO:K00626] [EC:2.3.1.9]
BAV2509  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BAV2514  acnA3; aconitate hydratase 2 [KO:K27802]
BAV2820  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BAV2961  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BAV3142  fdnG; formate dehydrogenase, major subunit [KO:K00123] [EC:1.17.1.9]
BAV3144  fdnH; nformate dehydrogenase, iron-sulfur subunit [KO:K00124]
BAV3145  fdnI; formate dehydrogenase, cytochrome b556 [KO:K00127]
BAV3234  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BAV3370  [KO:K00626] [EC:2.3.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bav00010  Glycolysis / Gluconeogenesis
bav00020  Citrate cycle (TCA cycle)
bav00030  Pentose phosphate pathway
bav00071  Fatty acid degradation
bav00230  Purine metabolism
bav00250  Alanine, aspartate and glutamate metabolism
bav00260  Glycine, serine and threonine metabolism
bav00270  Cysteine and methionine metabolism
bav00620  Pyruvate metabolism
bav00710  Carbon fixation by Calvin cycle
bav00750  Vitamin B6 metabolism
bav00910  Nitrogen metabolism
KO pathway
ko00630   

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