KEGG   PATHWAY: bbub00020
Entry
bbub00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bubalus bubalis (water buffalo)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbub00020  Citrate cycle (TCA cycle)
bbub00020

Module
bbub_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bbub00020]
bbub_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbub00020]
bbub_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbub00020]
Other DBs
GO: 0006099
Organism
Bubalus bubalis (water buffalo) [GN:bbub]
Gene
102388969  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
102390461  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
102391214  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
102392061  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
102392177  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
102392279  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X3 [KO:K00164] [EC:1.2.4.2]
102393057  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
102394180  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X3 [KO:K00164] [EC:1.2.4.2]
102394201  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X3 [KO:K00236]
102398316  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
102398474  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
102401675  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
102402497  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
102403372  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
102404908  PC; pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
102404946  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102407691  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
102407709  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X3 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102408203  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102410128  FH; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
102411277  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
102411769  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
102412518  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
102412686  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102413084  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
102415986  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
102415987  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
102416487  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
102416641  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbub00010  Glycolysis / Gluconeogenesis
bbub00053  Ascorbate and aldarate metabolism
bbub00061  Fatty acid biosynthesis
bbub00062  Fatty acid elongation
bbub00071  Fatty acid degradation
bbub00190  Oxidative phosphorylation
bbub00220  Arginine biosynthesis
bbub00250  Alanine, aspartate and glutamate metabolism
bbub00280  Valine, leucine and isoleucine degradation
bbub00350  Tyrosine metabolism
bbub00470  D-Amino acid metabolism
bbub00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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