KEGG   PATHWAY: bcj00020
Entry
bcj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia cenocepacia J2315
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcj00020  Citrate cycle (TCA cycle)
bcj00020

Module
bcj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcj00020]
bcj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcj00020]
bcj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcj00020]
bcj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcj00020]
bcj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcj00020]
Other DBs
GO: 0006099
Organism
Burkholderia cenocepacia J2315 [GN:bcj]
Gene
BCAM0972  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BCAL2746  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
BCAM0961  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BCAM1833  acnB; aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BCAL2735  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BCAL2736  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BCAL1515  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BCAL1516  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BCAL1215  lpdV; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCAL2207  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCAL1517  odhL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCAL0957  sucD; succinyl-CoA ligase alpha-chain [KO:K01902] [EC:6.2.1.5]
BCAL0956  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
BCAM1250  probable acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
BCAM0969  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCAM0970  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BCAM0967  putative succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
BCAM0968  putative succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BCAL2287  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BCAL2908  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BCAM0965  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCAM0175  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BCAM1581  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
BCAM1944  pyruvate dehydrogenase E1 component 2 [KO:K00163] [EC:1.2.4.1]
BCAS0711  pyruvate dehydrogenase E1 component 3 [KO:K00163] [EC:1.2.4.1]
BCAL2209  pyruvate dehydrogenase E1 component 1 [KO:K00163] [EC:1.2.4.1]
BCAL2208  pdhB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BCAL1909  acoC; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcj00010  Glycolysis / Gluconeogenesis
bcj00053  Ascorbate and aldarate metabolism
bcj00061  Fatty acid biosynthesis
bcj00071  Fatty acid degradation
bcj00190  Oxidative phosphorylation
bcj00220  Arginine biosynthesis
bcj00250  Alanine, aspartate and glutamate metabolism
bcj00280  Valine, leucine and isoleucine degradation
bcj00350  Tyrosine metabolism
bcj00470  D-Amino acid metabolism
bcj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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