KEGG   PATHWAY: bdg00010
Entry
bdg00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Bradyrhizobium daqingense
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bdg00010  Glycolysis / Gluconeogenesis
bdg00010

Module
bdg_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:bdg00010]
bdg_M00002  Glycolysis, core module involving three-carbon compounds [PATH:bdg00010]
bdg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bdg00010]
bdg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bdg00010]
Other DBs
GO: 0006096 0006094
Organism
Bradyrhizobium daqingense [GN:bdg]
Gene
LPJ38_24835  glk; glucokinase [KO:K00845] [EC:2.7.1.2]
LPJ38_29385  glk; glucokinase [KO:K00845] [EC:2.7.1.2]
LPJ38_13680  bifunctional transaldolase/phosoglucose isomerase [KO:K13810] [EC:2.2.1.2 5.3.1.9]
LPJ38_29390  1-phosphofructokinase family hexose kinase [KO:K16370] [EC:2.7.1.11]
LPJ38_15680  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
LPJ38_23670  glpX; class II fructose-bisphosphatase [KO:K11532] [EC:3.1.3.11 3.1.3.37]
LPJ38_37875  fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
LPJ38_15695  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
LPJ38_37870  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
LPJ38_25810  tpiA; triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
LPJ38_37860  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
LPJ38_37865  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
LPJ38_04095  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
LPJ38_25760  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
LPJ38_12090  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
LPJ38_15485  ppdK; pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
LPJ38_29365  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
LPJ38_17150  transketolase [KO:K00163] [EC:1.2.4.1]
LPJ38_19835  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LPJ38_25725  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LPJ38_25720  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LPJ38_19840  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
LPJ38_25705  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
LPJ38_19845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPJ38_25700  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPJ38_05315  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPJ38_13745  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LPJ38_13740  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LPJ38_32955  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
LPJ38_00895  Zn-dependent alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
LPJ38_29100  zinc-dependent alcohol dehydrogenase family protein [KO:K13953] [EC:1.1.1.1]
LPJ38_16950  alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
LPJ38_22515  alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
LPJ38_32910  methanol/ethanol family PQQ-dependent dehydrogenase [KO:K00114] [EC:1.1.2.8]
LPJ38_32980  methanol/ethanol family PQQ-dependent dehydrogenase [KO:K00114] [EC:1.1.2.8]
LPJ38_17155  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
LPJ38_21060  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
LPJ38_10000  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
LPJ38_25730  aldehyde dehydrogenase family protein [KO:K00138] [EC:1.2.1.-]
LPJ38_21905  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LPJ38_04675  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LPJ38_11160  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
LPJ38_08185  acetate--CoA ligase family protein [KO:K24012] [EC:6.2.1.13]
LPJ38_18940  galactose mutarotase [KO:K01785] [EC:5.1.3.3]
LPJ38_25855  HAD family phosphatase [KO:K20866] [EC:3.1.3.10]
LPJ38_33960  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
LPJ38_07985  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
LPJ38_07440  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
LPJ38_07915  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bdg00020  Citrate cycle (TCA cycle)
bdg00030  Pentose phosphate pathway
bdg00500  Starch and sucrose metabolism
bdg00620  Pyruvate metabolism
bdg00640  Propanoate metabolism
bdg00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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