KEGG   PATHWAY: bdg00030
Entry
bdg00030                    Pathway                                
Name
Pentose phosphate pathway - Bradyrhizobium daqingense
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bdg00030  Pentose phosphate pathway
bdg00030

Module
bdg_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bdg00030]
bdg_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bdg00030]
bdg_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bdg00030]
bdg_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bdg00030]
Other DBs
GO: 0006098
Organism
Bradyrhizobium daqingense [GN:bdg]
Gene
LPJ38_13680  bifunctional transaldolase/phosoglucose isomerase [KO:K13810] [EC:2.2.1.2 5.3.1.9]
LPJ38_13670  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
LPJ38_13665  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
LPJ38_05705  beta-propeller fold lactonase family protein [KO:K07404] [EC:3.1.1.31]
LPJ38_13675  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
LPJ38_15715  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
LPJ38_30560  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
LPJ38_15690  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
LPJ38_18450  transketolase [KO:K00615] [EC:2.2.1.1]
LPJ38_18455  transketolase family protein [KO:K00615] [EC:2.2.1.1]
LPJ38_28715  transketolase [KO:K00615] [EC:2.2.1.1]
LPJ38_28720  transketolase [KO:K00615] [EC:2.2.1.1]
LPJ38_30130  transketolase [KO:K00615] [EC:2.2.1.1]
LPJ38_30135  hypothetical protein [KO:K00615] [EC:2.2.1.1]
LPJ38_31985  transketolase [KO:K00615] [EC:2.2.1.1]
LPJ38_31990  transketolase [KO:K00615] [EC:2.2.1.1]
LPJ38_35355  transketolase family protein [KO:K00615] [EC:2.2.1.1]
LPJ38_35360  transketolase [KO:K00615] [EC:2.2.1.1]
LPJ38_37855  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
LPJ38_20990  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
LPJ38_22290  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
LPJ38_17200  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
LPJ38_22285  ribokinase [KO:K00852] [EC:2.7.1.15]
LPJ38_36535  ribokinase [KO:K00852] [EC:2.7.1.15]
LPJ38_33960  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
LPJ38_07985  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
LPJ38_07440  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
LPJ38_08495  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
LPJ38_29435  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
LPJ38_10720  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
LPJ38_21730  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LPJ38_11870  SDR family oxidoreductase [KO:K00034] [EC:1.1.1.47]
LPJ38_13455  SDR family oxidoreductase [KO:K00034] [EC:1.1.1.47]
LPJ38_13910  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
LPJ38_15125  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
LPJ38_17120  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
LPJ38_17160  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
LPJ38_17815  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
LPJ38_19455  isochorismatase family protein [KO:K01053] [EC:3.1.1.17]
LPJ38_35340  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
LPJ38_05665  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
LPJ38_13660  gluconokinase [KO:K00851] [EC:2.7.1.12]
LPJ38_21725  sugar kinase [KO:K00874] [EC:2.7.1.45]
LPJ38_00615  glycerate kinase [KO:K11529] [EC:2.7.1.165]
LPJ38_37875  fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
LPJ38_15695  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
LPJ38_37870  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
LPJ38_15680  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
LPJ38_23670  glpX; class II fructose-bisphosphatase [KO:K11532] [EC:3.1.3.11 3.1.3.37]
LPJ38_29390  1-phosphofructokinase family hexose kinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bdg00010  Glycolysis / Gluconeogenesis
bdg00040  Pentose and glucuronate interconversions
bdg00052  Galactose metabolism
bdg00230  Purine metabolism
bdg00240  Pyrimidine metabolism
bdg00340  Histidine metabolism
bdg00630  Glyoxylate and dicarboxylate metabolism
bdg00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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