KEGG   PATHWAY: bja00310
Entry
bja00310                    Pathway                                
Name
Lysine degradation - Bradyrhizobium diazoefficiens USDA 110
Class
Metabolism; Amino acid metabolism
Pathway map
bja00310  Lysine degradation
bja00310

Other DBs
GO: 0006554
Organism
Bradyrhizobium diazoefficiens USDA 110 [GN:bja]
Gene
bll0226  atoB; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
bll0449  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bll0451  sucB; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
bll2936  bll2936; ORF_ID:bll2936; hypothetical protein [KO:K00626] [EC:2.3.1.9]
bll3036  fadB; enoyl CoA hydratase [KO:K01692] [EC:4.2.1.17]
bll3461  pcaJ; 3-oxoadipate CoA-transferase subunit B [KO:K01035] [EC:2.8.3.8 2.8.3.9]
bll3462  pcaI; 3-oxoadipate CoA-transferase subunit A [KO:K01034] [EC:2.8.3.8 2.8.3.9]
bll3949  bll3949; acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
bll3998  bll3998; ORF_ID:bll3998; probable succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) [KO:K00135] [EC:1.2.1.16 1.2.1.79 1.2.1.20]
bll4301  bll4301; ORF_ID:bll4301; putative oxidoreductase protein [KO:K26064]
bll4778  bll4778; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bll5335  bll5335; ORF_ID:bll5335; putative thiolase [KO:K00626] [EC:2.3.1.9]
bll6176  bll6176; acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
bll6322  bll6322; aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
bll7400  bll7400; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
bll7596  bll7596; D-alanine aminotransferase [KO:K00824] [EC:2.6.1.21]
bll7607  bll7607; ORF_ID:bll7607; putative aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
bll7819  bll7819; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
blr0807  blr0807; succinate-semialdehyde dehydrogenase [KO:K00135] [EC:1.2.1.16 1.2.1.79 1.2.1.20]
blr1159  blr1159; acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
blr1160  fadB; enoyl-CoA hydratase [KO:K01782] [EC:1.1.1.35 4.2.1.17 5.1.2.3]
blr2427  blr2427; ORF_ID:blr2427; probable 3-ketoacyl-CoA thiolase (EC 2.3.1.16) [KO:K00626] [EC:2.3.1.9]
blr2428  blr2428; ORF_ID:blr2428; putative fatty acid oxidation complex alpha subunit [KO:K01782] [EC:1.1.1.35 4.2.1.17 5.1.2.3]
blr2616  gcdH; glutaryl-CoA dehydrogenase [KO:K00252] [EC:1.3.8.6]
blr2816  blr2816; aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
blr3722  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
blr3724  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
blr3776  betB; betaine aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
blr3924  blr3924; acetyl CoA synthase [KO:K00626] [EC:2.3.1.9]
blr4388  blr4388; ORF_ID:blr4388; hypothetical protein [KO:K01843] [EC:5.4.3.2]
blr6334  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
blr7806  blr7806; ORF_ID:blr7806; putative beta-ketoadipyl CoA thiolase (EC 2.3.1.-) [KO:K00626] [EC:2.3.1.9]
Compound
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00037  Glycine
C00042  Succinate
C00047  L-Lysine
C00068  Thiamin diphosphate
C00136  Butanoyl-CoA
C00164  Acetoacetate
C00322  2-Oxoadipate
C00332  Acetoacetyl-CoA
C00408  L-Pipecolate
C00431  5-Aminopentanoate
C00449  N6-(L-1,3-Dicarboxypropyl)-L-lysine
C00450  (S)-2,3,4,5-Tetrahydropyridine-2-carboxylate
C00487  Carnitine
C00489  Glutarate
C00527  Glutaryl-CoA
C00739  D-Lysine
C00877  Crotonoyl-CoA
C00956  L-2-Aminoadipate
C00990  5-Aminopentanamide
C01087  (R)-2-Hydroxyglutarate
C01142  (3S)-3,6-Diaminohexanoate
C01144  (S)-3-Hydroxybutanoyl-CoA
C01149  4-Trimethylammoniobutanal
C01181  4-Trimethylammoniobutanoate
C01186  (3S,5S)-3,5-Diaminohexanoate
C01211  Procollagen 5-hydroxy-L-lysine
C01259  (3S)-3-Hydroxy-N6,N6,N6-trimethyl-L-lysine
C01672  Cadaverine
C02188  Protein lysine
C02727  N6-Acetyl-L-lysine
C03087  5-Acetamidopentanoate
C03196  (S)-2-Hydroxyglutarate
C03239  6-Amino-2-oxohexanoate
C03273  5-Oxopentanoate
C03366  5-Phosphooxy-L-lysine
C03656  (S)-5-Amino-3-oxohexanoic acid
C03793  N6,N6,N6-Trimethyl-L-lysine
C04020  D-Lysopine
C04076  L-2-Aminoadipate 6-semialdehyde
C04092  Delta1-Piperideine-2-carboxylate
C04487  5-(D-Galactosyloxy)-L-lysine-procollagen
C05161  (2R,5S)-2,5-Diaminohexanoate
C05231  L-3-Aminobutyryl-CoA
C05544  Protein N6-methyl-L-lysine
C05545  Protein N6,N6-dimethyl-L-lysine
C05546  Protein N6,N6,N6-trimethyl-L-lysine
C05548  6-Acetamido-2-oxohexanoate
C05825  2-Amino-5-oxohexanoate
C06157  [Dihydrolipoyllysine-residue succinyltransferase] S-glutaryldihydrolipoyllysine
C12455  5-Aminopentanal
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16741  L-Hydroxylysine
C22667  4-Carboxy-1-hydroxybutyryl-ThPP
Reference
PMID:11802770
  Authors
Vaz FM, Wanders RJ.
  Title
Carnitine biosynthesis in mammals.
  Journal
Biochem J 361:417-29 (2002)
DOI:10.1042/bj3610417
Reference
PMID:1682209
  Authors
Large PJ, Robertson A.
  Title
The route of lysine breakdown in Candida tropicalis.
  Journal
FEMS Microbiol Lett 66:209-13 (1991)
DOI:10.1111/j.1574-6968.1990.tb03998.x
Related
pathway
bja00020  Citrate cycle (TCA cycle)
bja00300  Lysine biosynthesis
bja00780  Biotin metabolism
KO pathway
ko00310   

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