KEGG   PATHWAY: bmu00020
Entry
bmu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia multivorans ATCC 17616 (JGI)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bmu00020  Citrate cycle (TCA cycle)
bmu00020

Module
bmu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bmu00020]
bmu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bmu00020]
bmu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bmu00020]
bmu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bmu00020]
bmu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bmu00020]
Other DBs
GO: 0006099
Organism
Burkholderia multivorans ATCC 17616 (JGI) [GN:bmu]
Gene
Bmul_0761  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bmul_4643  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Bmul_4655  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Bmul_5149  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Bmul_0771  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Bmul_0770  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Bmul_1747  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Bmul_1746  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Bmul_1745  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bmul_1135  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bmul_3949  pyridine nucleotide-disulphide oxidoreductase dimerisation region [KO:K00382] [EC:1.8.1.4]
Bmul_0654  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Bmul_0653  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Bmul_4466  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
Bmul_4646  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bmul_5838  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bmul_5498  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bmul_5773  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bmul_5837  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bmul_4645  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bmul_5840  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Bmul_4648  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Bmul_4647  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Bmul_5839  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Bmul_1082  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Bmul_2213  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Bmul_4651  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bmul_4179  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Bmul_1133  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Bmul_1134  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Bmul_1436  alpha/beta hydrolase fold [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bmu00010  Glycolysis / Gluconeogenesis
bmu00053  Ascorbate and aldarate metabolism
bmu00061  Fatty acid biosynthesis
bmu00071  Fatty acid degradation
bmu00190  Oxidative phosphorylation
bmu00220  Arginine biosynthesis
bmu00250  Alanine, aspartate and glutamate metabolism
bmu00280  Valine, leucine and isoleucine degradation
bmu00350  Tyrosine metabolism
bmu00470  D-Amino acid metabolism
bmu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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