KEGG   PATHWAY: bpm00020
Entry
bpm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia pseudomallei 1710b
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpm00020  Citrate cycle (TCA cycle)
bpm00020

Module
bpm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpm00020]
bpm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpm00020]
bpm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpm00020]
bpm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpm00020]
bpm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpm00020]
Other DBs
GO: 0006099
Organism
Burkholderia pseudomallei 1710b [GN:bpm]
Gene
BURPS1710b_A0788  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BURPS1710b_1097  cisZ; citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
BURPS1710b_A0800  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BURPS1710b_1108  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BURPS1710b_1924  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BURPS1710b_1925  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BURPS1710b_2743  lpdA; pyruvate dehydrogenase, E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BURPS1710b_A1408  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BURPS1710b_1926  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BURPS1710b_0977  sucD; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BURPS1710b_0975  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
BURPS1710b_A2071  aarC; acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
BURPS1710b_A0791  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BURPS1710b_A1395  sdhB-2; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BURPS1710b_A0790  sdhB-1; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BURPS1710b_A0793  sdhC; succinate dehydrogenase cytochrome B subunit [KO:K00241]
BURPS1710b_A0792  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BURPS1710b_A1936  fumA; hydro-lyase, Fe-S type, tartrate/fumarate family [KO:K01676] [EC:4.2.1.2]
BURPS1710b_2940  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BURPS1710b_A0795  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BURPS1710b_1574  Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BURPS1710b_A0783  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BURPS1710b_2746  aceE; pyruvate dehydrogenase, E1 component [KO:K00163] [EC:1.2.4.1]
BURPS1710b_2744  aceF; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpm00010  Glycolysis / Gluconeogenesis
bpm00053  Ascorbate and aldarate metabolism
bpm00061  Fatty acid biosynthesis
bpm00071  Fatty acid degradation
bpm00190  Oxidative phosphorylation
bpm00220  Arginine biosynthesis
bpm00250  Alanine, aspartate and glutamate metabolism
bpm00280  Valine, leucine and isoleucine degradation
bpm00350  Tyrosine metabolism
bpm00470  D-Amino acid metabolism
bpm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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