KEGG   PATHWAY: bpx00030
Entry
bpx00030                    Pathway                                
Name
Pentose phosphate pathway - Paraburkholderia phenoliruptrix
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpx00030  Pentose phosphate pathway
bpx00030

Module
bpx_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bpx00030]
bpx_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bpx00030]
bpx_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bpx00030]
bpx_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bpx00030]
bpx_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:bpx00030]
Other DBs
GO: 0006098
Organism
Paraburkholderia phenoliruptrix [GN:bpx]
Gene
BUPH_02213  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BUPH_06128  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BUPH_05400  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BUPH_01272  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BUPH_05401  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
BUPH_04493  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
BUPH_05235  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
BUPH_00202  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BUPH_05858  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BUPH_06228  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BUPH_03563  transketolase [KO:K00615] [EC:2.2.1.1]
BUPH_00542  transketolase [KO:K00615] [EC:2.2.1.1]
BUPH_05969  transketolase [KO:K00615] [EC:2.2.1.1]
BUPH_05968  transketolase [KO:K00615] [EC:2.2.1.1]
BUPH_08115  transketolase [KO:K00615] [EC:2.2.1.1]
BUPH_06561  transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
BUPH_00224  transketolase [KO:K00615] [EC:2.2.1.1]
BUPH_05250  transaldolase [KO:K00616] [EC:2.2.1.2]
BUPH_02403  ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
BUPH_00198  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
BUPH_02089  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
BUPH_02036  ribokinase [KO:K00852] [EC:2.7.1.15]
BUPH_02091  ribokinase [KO:K00852] [EC:2.7.1.15]
BUPH_05523  phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
BUPH_05816  ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
BUPH_04198  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BUPH_03541  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
BUPH_03540  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BUPH_02544  glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
BUPH_01169  glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
BUPH_05708  quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
BUPH_04451  gluconolactonase [KO:K01053] [EC:3.1.1.17]
BUPH_01006  gluconolactonase [KO:K01053] [EC:3.1.1.17]
BUPH_00923  gluconolactonase [KO:K01053] [EC:3.1.1.17]
BUPH_02021  gluconate 2-dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BUPH_03138  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BUPH_03538  gluconokinase [KO:K00851] [EC:2.7.1.12]
BUPH_02259  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
BUPH_02019  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
BUPH_00206  fructose-bisphosphate aldolase, class I [KO:K01623] [EC:4.1.2.13]
BUPH_00541  fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
BUPH_03450  fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
BUPH_03272  fructose-1,6-bisphosphatase I [KO:K03841] [EC:3.1.3.11]
BUPH_00544  fructose-1,6-bisphosphatase I [KO:K01086] [EC:3.1.3.11 3.1.3.37]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bpx00010  Glycolysis / Gluconeogenesis
bpx00040  Pentose and glucuronate interconversions
bpx00052  Galactose metabolism
bpx00230  Purine metabolism
bpx00240  Pyrimidine metabolism
bpx00340  Histidine metabolism
bpx00630  Glyoxylate and dicarboxylate metabolism
bpx00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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