KEGG   PATHWAY: bpy00010
Entry
bpy00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Paraburkholderia phytofirmans PsJN
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpy00010  Glycolysis / Gluconeogenesis
bpy00010

Module
bpy_M00002  Glycolysis, core module involving three-carbon compounds [PATH:bpy00010]
bpy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpy00010]
bpy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpy00010]
Other DBs
GO: 0006096 0006094
Organism
Paraburkholderia phytofirmans PsJN [GN:bpy]
Gene
Bphyt_1025  glucokinase [KO:K00845] [EC:2.7.1.2]
Bphyt_1914  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Bphyt_3071  Inositol phosphatase/fructose-16-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Bphyt_2128  Fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
Bphyt_3275  fructose-bisphosphate aldolase, class II, Calvin cycle subtype [KO:K01624] [EC:4.1.2.13]
Bphyt_1341  Triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
Bphyt_3390  glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
Bphyt_3277  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
Bphyt_0534  phosphoglycerate mutase 1 family [KO:K01834] [EC:5.4.2.11]
Bphyt_3348  Phosphoglycerate mutase [KO:K15634] [EC:5.4.2.11]
Bphyt_2560  Phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Bphyt_3276  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
Bphyt_2438  phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
Bphyt_3972  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Bphyt_2591  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Bphyt_5918  alpha/beta hydrolase fold [KO:K00627] [EC:2.3.1.12]
Bphyt_2590  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Bphyt_2589  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bphyt_1642  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bphyt_3253  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
Bphyt_5114  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
Bphyt_0108  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
Bphyt_6316  zinc-binding alcohol dehydrogenase family protein [KO:K13953] [EC:1.1.1.1]
Bphyt_1700  Aldehyde reductase [KO:K00002] [EC:1.1.1.2]
Bphyt_5515  Alcohol dehydrogenase GroES domain protein [KO:K13979] [EC:1.1.1.2]
Bphyt_4928  Alcohol dehydrogenase zinc-binding domain protein [KO:K13979] [EC:1.1.1.2]
Bphyt_4638  Gluconate 2-dehydrogenase (acceptor) [KO:K22474] [EC:1.1.5.5]
Bphyt_4961  Gluconate 2-dehydrogenase (acceptor) [KO:K22474] [EC:1.1.5.5]
Bphyt_0226  Gluconate 2-dehydrogenase (acceptor) [KO:K22474] [EC:1.1.5.5]
Bphyt_2030  Gluconate 2-dehydrogenase (acceptor) [KO:K22474] [EC:1.1.5.5]
Bphyt_5195  Aldehyde dehydrogenase (NAD(+)) [KO:K00128] [EC:1.2.1.3]
Bphyt_6154  Aldehyde Dehydrogenase [KO:K00128] [EC:1.2.1.3]
Bphyt_6025  Aldehyde Dehydrogenase [KO:K00128] [EC:1.2.1.3]
Bphyt_1095  Aldehyde Dehydrogenase [KO:K00128] [EC:1.2.1.3]
Bphyt_7193  Aldehyde Dehydrogenase [KO:K00128] [EC:1.2.1.3]
Bphyt_5518  Aldehyde Dehydrogenase [KO:K00128] [EC:1.2.1.3]
Bphyt_1517  Aldehyde Dehydrogenase [KO:K00128] [EC:1.2.1.3]
Bphyt_0024  Aldehyde Dehydrogenase [KO:K00138] [EC:1.2.1.-]
Bphyt_2727  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_6450  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_5594  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_1416  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_5649  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Bphyt_4084  CoA-binding domain protein [KO:K24012] [EC:6.2.1.13]
Bphyt_5770  CoA-binding domain protein [KO:K24012] [EC:6.2.1.13]
Bphyt_6635  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
Bphyt_3405  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
Bphyt_0383  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
Bphyt_5336  HAD-superfamily hydrolase, subfamily IA, variant 3 [KO:K20866] [EC:3.1.3.10]
Bphyt_0920  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Bphyt_7098  ROK family protein [KO:K00886] [EC:2.7.1.63]
Bphyt_0304  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpy00020  Citrate cycle (TCA cycle)
bpy00030  Pentose phosphate pathway
bpy00500  Starch and sucrose metabolism
bpy00620  Pyruvate metabolism
bpy00640  Propanoate metabolism
bpy00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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