KEGG   PATHWAY: bqy00020
Entry
bqy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus velezensis YAU B9601-Y2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bqy00020  Citrate cycle (TCA cycle)
bqy00020

Module
bqy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bqy00020]
bqy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bqy00020]
bqy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bqy00020]
bqy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bqy00020]
bqy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bqy00020]
Other DBs
GO: 0006099
Organism
Bacillus velezensis YAU B9601-Y2 [GN:bqy]
Gene
MUS_0983  citA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
MUS_2704  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
MUS_3190  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
MUS_2130  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MUS_3189  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MUS_2287  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MUS_2286  odhB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
MUS_1556  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUS_0838  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUS_2696  bfmBC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUS_1761  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
MUS_1760  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
MUS_3117  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
MUS_3116  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
MUS_3118  sdhC; succinate dehydrogenase [KO:K00241]
MUS_3609  citG; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MUS_3188  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MUS_1632  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MUS_3342  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MUS_1553  pdhA; pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
MUS_1554  pdhB; pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
MUS_0837  acoC; pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
MUS_1555  pdhC; pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bqy00010  Glycolysis / Gluconeogenesis
bqy00053  Ascorbate and aldarate metabolism
bqy00061  Fatty acid biosynthesis
bqy00071  Fatty acid degradation
bqy00190  Oxidative phosphorylation
bqy00220  Arginine biosynthesis
bqy00250  Alanine, aspartate and glutamate metabolism
bqy00280  Valine, leucine and isoleucine degradation
bqy00350  Tyrosine metabolism
bqy00470  D-Amino acid metabolism
bqy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system