KEGG   PATHWAY: brad00630
Entry
brad00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium sp. BF49
Class
Metabolism; Carbohydrate metabolism
Pathway map
brad00630  Glyoxylate and dicarboxylate metabolism
brad00630

Module
brad_M00012  Glyoxylate cycle [PATH:brad00630]
brad_M00621  Glycine cleavage system [PATH:brad00630]
brad_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:brad00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium sp. BF49 [GN:brad]
Gene
BF49_2345  Isocitrate lyase EC 4131 [KO:K01637] [EC:4.1.3.1]
BF49_0267  Acetylcoenzyme A synthetase EC 6211 [KO:K01895] [EC:6.2.1.1]
BF49_1094  Acetylcoenzyme A synthetase EC 6211 [KO:K01895] [EC:6.2.1.1]
BF49_2879  Acetylcoenzyme A synthetase EC 6211 [KO:K01895] [EC:6.2.1.1]
BF49_4251  Malate synthase G EC 2339 [KO:K01638] [EC:2.3.3.9]
BF49_0402  Malate dehydrogenase EC 11137 [KO:K00024] [EC:1.1.1.37]
BF49_6722  Citrate synthase si EC 2331 [KO:K01647] [EC:2.3.3.1]
BF49_0597  Citrate synthase si EC 2331 [KO:K01647] [EC:2.3.3.1]
BF49_0598  Citrate synthase si EC 2331 [KO:K01647] [EC:2.3.3.1]
BF49_0391  Aconitate hydratase EC 4213 [KO:K01681] [EC:4.2.1.3]
BF49_1103  3ketoacylCoA thiolase EC 23116 AcetylCoA acetyltransferase EC 2319 [KO:K00626] [EC:2.3.1.9]
BF49_1756  COGs COG0183 [KO:K00626] [EC:2.3.1.9]
BF49_4174  3ketoacylCoA thiolase EC 23116 AcetylCoA acetyltransferase EC 2319 [KO:K00626] [EC:2.3.1.9]
BF49_0553  AcetylCoA acetyltransferase EC 2319 [KO:K00626] [EC:2.3.1.9]
BF49_3229  3ketoacylCoA thiolase EC 23116 AcetylCoA acetyltransferase EC 2319 [KO:K00626] [EC:2.3.1.9]
BF49_3996  3ketoacylCoA thiolase EC 23116 AcetylCoA acetyltransferase EC 2319 [KO:K00626] [EC:2.3.1.9]
BF49_6453  3ketoacylCoA thiolase EC 23116 AcetylCoA acetyltransferase EC 2319 [KO:K00626] [EC:2.3.1.9]
BF49_1131  3ketoacylCoA thiolase EC 23116 [KO:K00626] [EC:2.3.1.9]
BF49_2922  3ketoacylCoA thiolase EC 23116 [KO:K00626] [EC:2.3.1.9]
BF49_2374  3ketoacylCoA thiolase EC 23116 AcetylCoA acetyltransferase EC 2319 [KO:K00626] [EC:2.3.1.9]
BF49_5415  3ketoacylCoA thiolase EC 23116 AcetylCoA acetyltransferase EC 2319 [KO:K00626] [EC:2.3.1.9]
BF49_6294  AcetylCoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BF49_0554  AcetoacetylCoA reductase EC 11136 [KO:K00023] [EC:1.1.1.36]
BF49_6655  MethylmalonylCoA epimerase EC 51991 EthylmalonylCoA epimerase [KO:K05606] [EC:5.1.99.1]
BF49_2901  MalylCoA lyase EC 41324 [KO:K08691] [EC:4.1.3.24 4.1.3.25]
BF49_6363  Biotin carboxylase EC 63414 Biotin carboxyl carrier protein [KO:K01965] [EC:6.4.1.3]
BF49_6277  PropionylCoA carboxylase beta chain EC 6413 [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BF49_1634  MethylmalonylCoA mutase EC 54992 [KO:K01847] [EC:5.4.99.2]
BF49_1637  MethylmalonylCoA mutase EC 54992 [KO:K01847] [EC:5.4.99.2]
BF49_3075  Glycolate dehydrogenase EC 119914 subunit GlcD [KO:K00104] [EC:1.1.99.14]
BF49_3074  Glycolate dehydrogenase EC 119914 FADbinding subunit GlcE [KO:K11472] [EC:1.1.99.14]
BF49_3073  Glycolate dehydrogenase EC 119914 ironsulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
BF49_0069  Glyoxylate reductase EC 11179 Glyoxylate reductase EC 11126 Hydroxypyruvate reductase EC 11181 [KO:K00015] [EC:1.1.1.26]
BF49_4361  D3phosphoglycerate dehydrogenase EC 11195 [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BF49_4940  D3phosphoglycerate dehydrogenase EC 11195 [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BF49_6823  blr4704 putative phosphoglycolate phosphatase EC 31318 [KO:K01091] [EC:3.1.3.18]
BF49_6426  Phosphoglycolate phosphatase EC 31318 [KO:K01091] [EC:3.1.3.18]
BF49_1290  Phosphoglycolate phosphatase EC 31318 [KO:K01091] [EC:3.1.3.18]
BF49_2160  Ribulose bisphosphate carboxylase large chain EC 41139 [KO:K01601] [EC:4.1.1.39]
BF49_2159  Ribulose bisphosphate carboxylase small chain EC 41139 [KO:K01602] [EC:4.1.1.39]
BF49_5632  Serineglyoxylate aminotransferase EC 26145 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BF49_0473  Serineglyoxylate aminotransferase EC 26145 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BF49_0889  Glutamine synthetase type II eukaryotic EC 6312 [KO:K01915] [EC:6.3.1.2]
BF49_6608  Glutamine synthetase type I EC 6312 [KO:K01915] [EC:6.3.1.2]
BF49_6544  Serine hydroxymethyltransferase EC 2121 [KO:K00600] [EC:2.1.2.1]
BF49_5884  Glycine dehydrogenase decarboxylating glycine cleavage system P protein EC 1442 [KO:K00281] [EC:1.4.4.2]
BF49_5886  Aminomethyltransferase glycine cleavage system T protein EC 21210 [KO:K00605] [EC:2.1.2.10]
BF49_6764  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex EC 1814 [KO:K00382] [EC:1.8.1.4]
BF49_0410  Dihydrolipoamide dehydrogenase of 2oxoglutarate dehydrogenase EC 1814 [KO:K00382] [EC:1.8.1.4]
BF49_5885  Glycine cleavage system H protein [KO:K02437]
BF49_1515  Glyoxylate carboligase EC 41147 [KO:K01608] [EC:4.1.1.47]
BF49_1514  Hydroxypyruvate isomerase EC 53122 [KO:K01816] [EC:5.3.1.22]
BF49_1513  2hydroxy3oxopropionate reductase EC 11160 [KO:K00042] [EC:1.1.1.60]
BF49_4162  Dglycerate 2kinase EC 271 [KO:K11529] [EC:2.7.1.165]
BF49_1775  Tartrate dehydrogenase EC 11193 Tartrate decarboxylase EC 41173 Dmalic enzyme EC 11183 [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BF49_5093  Tartrate dehydrogenase EC 11193 Tartrate decarboxylase EC 41173 Dmalic enzyme EC 11183 [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BF49_1132  2dehydro3deoxyphosphogluconate aldolase EC 41214 4Hydroxy2oxoglutarate aldolase EC 41316 [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BF49_1552  NADdependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
BF49_1550  NADdependent formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
BF49_2623  tungstencontaining formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
BF49_2624  tungstencontaining formate dehydrogenase beta subunit [KO:K22515] [EC:1.17.1.9]
BF49_1549  NADdependent formate dehydrogenase beta subunit [KO:K00124]
BF49_1548  NADdependent formate dehydrogenase gamma subunit [KO:K00127]
BF49_0902  putative esterase [KO:K01432] [EC:3.5.1.9]
BF49_5691  Formyltetrahydrofolate deformylase EC 35110 [KO:K01433] [EC:3.5.1.10]
BF49_7217  Formamidase EC 35149 [KO:K01455] [EC:3.5.1.49]
BF49_1521  Glyoxylate carboligase EC 41147 [KO:K01577] [EC:4.1.1.8]
BF49_1522  Formylcoenzyme A transferase EC 28316 [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
brad00010  Glycolysis / Gluconeogenesis
brad00020  Citrate cycle (TCA cycle)
brad00030  Pentose phosphate pathway
brad00053  Ascorbate and aldarate metabolism
brad00071  Fatty acid degradation
brad00230  Purine metabolism
brad00250  Alanine, aspartate and glutamate metabolism
brad00260  Glycine, serine and threonine metabolism
brad00620  Pyruvate metabolism
brad00710  Carbon fixation by Calvin cycle
brad00750  Vitamin B6 metabolism
brad00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system