KEGG   PATHWAY: brad00020
Entry
brad00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bradyrhizobium sp. BF49
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
brad00020  Citrate cycle (TCA cycle)
brad00020

Module
brad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:brad00020]
brad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:brad00020]
brad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:brad00020]
brad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:brad00020]
brad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:brad00020]
Other DBs
GO: 0006099
Organism
Bradyrhizobium sp. BF49 [GN:brad]
Gene
BF49_6722  Citrate synthase si EC 2331 [KO:K01647] [EC:2.3.3.1]
BF49_0597  Citrate synthase si EC 2331 [KO:K01647] [EC:2.3.3.1]
BF49_0598  Citrate synthase si EC 2331 [KO:K01647] [EC:2.3.3.1]
BF49_0391  Aconitate hydratase EC 4213 [KO:K01681] [EC:4.2.1.3]
BF49_5890  Isocitrate dehydrogenase NADP EC 11142 [KO:K00031] [EC:1.1.1.42]
BF49_0406  2oxoglutarate dehydrogenase E1 component EC 1242 [KO:K00164] [EC:1.2.4.2]
BF49_0408  Dihydrolipoamide succinyltransferase component E2 of 2oxoglutarate dehydrogenase complex EC 23161 [KO:K00658] [EC:2.3.1.61]
BF49_6764  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex EC 1814 [KO:K00382] [EC:1.8.1.4]
BF49_0410  Dihydrolipoamide dehydrogenase of 2oxoglutarate dehydrogenase EC 1814 [KO:K00382] [EC:1.8.1.4]
BF49_4909  2oxoglutarate oxidoreductase alpha subunit EC 1273 [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BF49_4908  2oxoglutarate oxidoreductase beta subunit EC 1273 [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BF49_0405  SuccinylCoA ligase ADPforming alpha chain EC 6215 [KO:K01902] [EC:6.2.1.5]
BF49_0403  SuccinylCoA ligase ADPforming beta chain EC 6215 [KO:K01903] [EC:6.2.1.5]
BF49_0338  Succinate dehydrogenase flavoprotein subunit EC 13991 [KO:K00239] [EC:1.3.5.1]
BF49_5283  Succinate dehydrogenase ironsulfur protein EC 13991 [KO:K00240] [EC:1.3.5.1]
BF49_0337  Succinate dehydrogenase ironsulfur protein EC 13991 [KO:K00240] [EC:1.3.5.1]
BF49_0340  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
BF49_0339  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BF49_5845  Fumarate hydratase class I aerobic EC 4212 [KO:K01676] [EC:4.2.1.2]
BF49_5155  Fumarate hydratase class II EC 4212 [KO:K01679] [EC:4.2.1.2]
BF49_0402  Malate dehydrogenase EC 11137 [KO:K00024] [EC:1.1.1.37]
BF49_3959  Phosphoenolpyruvate carboxykinase ATP EC 41149 [KO:K01610] [EC:4.1.1.49]
BF49_1868  Pyruvate dehydrogenase E1 component EC 1241 [KO:K00163] [EC:1.2.4.1]
BF49_6758  Pyruvate dehydrogenase E1 component alpha subunit EC 1241 [KO:K00161] [EC:1.2.4.1]
BF49_6759  Pyruvate dehydrogenase E1 component beta subunit EC 1241 Branchedchain alphaketo acid dehydrogenase E1 component beta subunit EC 1244 [KO:K00162] [EC:1.2.4.1]
BF49_6762  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex EC 23112 Dihydrolipoamide acyltransferase component of branchedchain alphaketo acid dehydrogenase complex EC 231168 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
brad00010  Glycolysis / Gluconeogenesis
brad00053  Ascorbate and aldarate metabolism
brad00061  Fatty acid biosynthesis
brad00071  Fatty acid degradation
brad00190  Oxidative phosphorylation
brad00220  Arginine biosynthesis
brad00250  Alanine, aspartate and glutamate metabolism
brad00280  Valine, leucine and isoleucine degradation
brad00350  Tyrosine metabolism
brad00470  D-Amino acid metabolism
brad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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