KEGG   PATHWAY: brey00020
Entry
brey00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bdellovibrio reynosensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
brey00020  Citrate cycle (TCA cycle)
brey00020

Module
brey_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:brey00020]
brey_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:brey00020]
brey_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:brey00020]
brey_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:brey00020]
Other DBs
GO: 0006099
Organism
Bdellovibrio reynosensis [GN:brey]
Gene
MNR06_01495  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
MNR06_09320  citrate synthase [KO:K01647] [EC:2.3.3.1]
MNR06_00335  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MNR06_15240  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
MNR06_12900  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
MNR06_06695  isocitrate/isopropylmalate family dehydrogenase [KO:K00030] [EC:1.1.1.41]
MNR06_00555  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MNR06_00550  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MNR06_00545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MNR06_08565  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MNR06_12330  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MNR06_12335  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MNR06_11780  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MNR06_11775  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MNR06_11785  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MNR06_02790  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MNR06_06470  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MNR06_12340  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MNR06_13485  ATP-grasp domain-containing protein [KO:K01959] [EC:6.4.1.1]
MNR06_10040  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
MNR06_08560  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
brey00010  Glycolysis / Gluconeogenesis
brey00061  Fatty acid biosynthesis
brey00071  Fatty acid degradation
brey00190  Oxidative phosphorylation
brey00220  Arginine biosynthesis
brey00250  Alanine, aspartate and glutamate metabolism
brey00280  Valine, leucine and isoleucine degradation
brey00350  Tyrosine metabolism
brey00470  D-Amino acid metabolism
brey00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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