KEGG   PATHWAY: bum00020
Entry
bum00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia sp. PAMC 26561
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bum00020  Citrate cycle (TCA cycle)
bum00020

Module
bum_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bum00020]
bum_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bum00020]
bum_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bum00020]
bum_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bum00020]
bum_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bum00020]
Other DBs
GO: 0006099
Organism
Burkholderia sp. PAMC 26561 [GN:bum]
Gene
AXG89_40010  citrate synthase [KO:K01647] [EC:2.3.3.1]
AXG89_20000  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AXG89_19935  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AXG89_28045  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AXG89_32275  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AXG89_22840  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AXG89_38095  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AXG89_09260  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AXG89_14840  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AXG89_14835  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AXG89_17475  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AXG89_11310  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AXG89_14830  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AXG89_08890  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AXG89_08885  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AXG89_25605  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AXG89_19985  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AXG89_27085  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AXG89_25600  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AXG89_19990  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AXG89_27090  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AXG89_25615  succinate dehydrogenase [KO:K00241]
AXG89_19975  succinate dehydrogenase [KO:K00241]
AXG89_27075  succinate dehydrogenase [KO:K00241]
AXG89_25610  succinate dehydrogenase [KO:K00242]
AXG89_19980  succinate dehydrogenase [KO:K00242]
AXG89_27080  succinate dehydrogenase [KO:K00242]
AXG89_15430  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AXG89_01275  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AXG89_19960  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AXG89_06000  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AXG89_14685  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AXG89_11300  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AXG89_11305  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bum00010  Glycolysis / Gluconeogenesis
bum00053  Ascorbate and aldarate metabolism
bum00061  Fatty acid biosynthesis
bum00071  Fatty acid degradation
bum00190  Oxidative phosphorylation
bum00220  Arginine biosynthesis
bum00250  Alanine, aspartate and glutamate metabolism
bum00280  Valine, leucine and isoleucine degradation
bum00350  Tyrosine metabolism
bum00470  D-Amino acid metabolism
bum00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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