KEGG   PATHWAY: bum00030
Entry
bum00030                    Pathway                                
Name
Pentose phosphate pathway - Burkholderia sp. PAMC 26561
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bum00030  Pentose phosphate pathway
bum00030

Module
bum_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bum00030]
bum_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bum00030]
bum_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bum00030]
bum_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bum00030]
bum_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:bum00030]
Other DBs
GO: 0006098
Organism
Burkholderia sp. PAMC 26561 [GN:bum]
Gene
AXG89_13105  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
AXG89_13670  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
AXG89_24230  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AXG89_17540  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AXG89_10370  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AXG89_22090  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AXG89_28460  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AXG89_10375  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
AXG89_10825  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
AXG89_38495  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
AXG89_22820  hypothetical protein [KO:K07404] [EC:3.1.1.31]
AXG89_22845  hemagglutinin [KO:K07404] [EC:3.1.1.31]
AXG89_37615  hypothetical protein [KO:K07404] [EC:3.1.1.31]
AXG89_26285  hypothetical protein [KO:K07404] [EC:3.1.1.31]
AXG89_31755  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
AXG89_32280  hemagglutinin [KO:K07404] [EC:3.1.1.31]
AXG89_32535  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
AXG89_18615  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AXG89_12445  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AXG89_03650  ribulose phosphate epimerase [KO:K01783] [EC:5.1.3.1]
AXG89_08465  transketolase [KO:K00615] [EC:2.2.1.1]
AXG89_12440  transketolase [KO:K00615] [EC:2.2.1.1]
AXG89_30205  transketolase [KO:K00615] [EC:2.2.1.1]
AXG89_30210  transketolase [KO:K00615] [EC:2.2.1.1]
AXG89_10755  transaldolase [KO:K00616] [EC:2.2.1.2]
AXG89_41045  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
AXG89_14615  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
AXG89_22475  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
AXG89_35595  2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
AXG89_35580  ribokinase [KO:K00852] [EC:2.7.1.15]
AXG89_37695  hypothetical protein [KO:K00852] [EC:2.7.1.15]
AXG89_38750  ribokinase [KO:K00852] [EC:2.7.1.15]
AXG89_01800  phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
AXG89_15895  ribose-phosphate pyrophosphokinase [KO:K05774] [EC:2.7.4.23]
AXG89_07300  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AXG89_08560  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
AXG89_08565  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AXG89_17465  sugar dehydrogenase [KO:K00034] [EC:1.1.1.47]
AXG89_20175  choline dehydrogenase [KO:K19813] [EC:1.1.5.9]
AXG89_12085  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
AXG89_40650  gluconolactonase [KO:K01053] [EC:3.1.1.17]
AXG89_18555  gluconolactonase [KO:K01053] [EC:3.1.1.17]
AXG89_41335  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
AXG89_41330  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
AXG89_01155  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AXG89_13870  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AXG89_08575  gluconate kinase [KO:K00851] [EC:2.7.1.12]
AXG89_13880  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
AXG89_22115  hypothetical protein [KO:K17468] [EC:4.3.1.29]
AXG89_34985  class I fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
AXG89_08970  fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
AXG89_10125  fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bum00010  Glycolysis / Gluconeogenesis
bum00040  Pentose and glucuronate interconversions
bum00052  Galactose metabolism
bum00230  Purine metabolism
bum00240  Pyrimidine metabolism
bum00340  Histidine metabolism
bum00630  Glyoxylate and dicarboxylate metabolism
bum00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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