KEGG   PATHWAY: bxh00260
Entry
bxh00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Bacillus amyloliquefaciens XH7
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
bxh00260  Glycine, serine and threonine metabolism
bxh00260

Module
bxh_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:bxh00260]
bxh_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:bxh00260]
bxh_M00555  Betaine biosynthesis, choline => betaine [PATH:bxh00260]
bxh_M00621  Glycine cleavage system [PATH:bxh00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Bacillus amyloliquefaciens XH7 [GN:bxh]
Gene
BAXH7_00014  glxK; glycerate kinase [KO:K00865] [EC:2.7.1.165]
BAXH7_00225  pssA; phosphatidylserine synthase [KO:K17103] [EC:2.7.8.8]
BAXH7_00364  yclM; aspartate kinase [KO:K00928] [EC:2.7.2.4]
BAXH7_00496  racX; amino acid racemase [KO:K25316]
BAXH7_00787  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAXH7_00987  serC; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
BAXH7_01133  serA; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
BAXH7_01179  [KO:K01696] [EC:4.2.1.20]
BAXH7_01180  trpA; tryptophan synthase (alpha subunit) [KO:K01695] [EC:4.2.1.20]
BAXH7_01446  ilvA; threonine dehydratase [KO:K01754] [EC:4.3.1.19]
BAXH7_01562  yoaD; putative 2-hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
BAXH7_01762  kbl; 2-amino-3-ketobutyrate coenzyme A ligase [KO:K00639] [EC:2.3.1.29]
BAXH7_01763  tdh; L-threonine 3-dehydrogenase [KO:K00060] [EC:1.1.1.103]
BAXH7_01786  dapG; aspartate kinase I [KO:K00928] [EC:2.7.2.4]
BAXH7_01787  asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
BAXH7_01875  sdaAA; L-serine dehydratase (alpha chain) [KO:K01752] [EC:4.3.1.17]
BAXH7_01876  sdaAB; L-serine dehydratase (beta chain) [KO:K01752] [EC:4.3.1.17]
BAXH7_02007  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAXH7_02484  dsdA; D-serine dehydratase [KO:K01753] [EC:4.3.1.18]
BAXH7_02515  lpdV; branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BAXH7_02574  gcvPB; glycine dehydrogenase subunit 2 [KO:K00283] [EC:1.4.4.2]
BAXH7_02575  gcvPA; glycine dehydrogenase subunit 1 [KO:K00282] [EC:1.4.4.2]
BAXH7_02576  gcvT; glycine cleavage system aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
BAXH7_02735  yrhB; cystathionine beta-lyase [KO:K17217] [EC:4.4.1.1 4.4.1.2]
BAXH7_02863  lysC; aspartate kinase [KO:K00928] [EC:2.7.2.4]
BAXH7_02909  ysaA; putative phosphatase [KO:K25528]
BAXH7_03103  gbsB; choline dehydrogenase [KO:K11440] [EC:1.1.1.1]
BAXH7_03104  gbsA; glycine betaine aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
BAXH7_03329  thrB; homoserine kinase [KO:K00872] [EC:2.7.1.39]
BAXH7_03330  thrC; threonine synthase [KO:K01733] [EC:4.2.3.1]
BAXH7_03331  hom; homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
BAXH7_03388  gcvH; glycine cleavage system protein H [KO:K02437]
BAXH7_03528  pgm2; phosphoglyceromutase [KO:K15633] [EC:5.4.2.12]
BAXH7_03597  yvcT; putative 2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BAXH7_03826  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
C23135  (2S,3S)-2-Acetamido-3-hydroxy-4-aminobutyrate
C23136  4-Amino-L-allothreonine
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
bxh00010  Glycolysis / Gluconeogenesis
bxh00020  Citrate cycle (TCA cycle)
bxh00230  Purine metabolism
bxh00250  Alanine, aspartate and glutamate metabolism
bxh00270  Cysteine and methionine metabolism
bxh00290  Valine, leucine and isoleucine biosynthesis
bxh00300  Lysine biosynthesis
bxh00330  Arginine and proline metabolism
bxh00460  Cyanoamino acid metabolism
bxh00470  D-Amino acid metabolism
bxh00564  Glycerophospholipid metabolism
bxh00600  Sphingolipid metabolism
bxh00620  Pyruvate metabolism
bxh00630  Glyoxylate and dicarboxylate metabolism
bxh00640  Propanoate metabolism
bxh00680  Methane metabolism
bxh00860  Porphyrin metabolism
bxh00920  Sulfur metabolism
KO pathway
ko00260   

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