KEGG   PATHWAY: cdk00020
Entry
cdk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Camelus dromedarius (Arabian camel)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cdk00020  Citrate cycle (TCA cycle)
cdk00020

Module
cdk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cdk00020]
cdk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cdk00020]
cdk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cdk00020]
cdk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cdk00020]
cdk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cdk00020]
Other DBs
GO: 0006099
Organism
Camelus dromedarius (Arabian camel) [GN:cdk]
Gene
105086365  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
105090445  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
105085561  ACO1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
105091900  ACO2; aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
105093551  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
105094685  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
105096042  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
105098707  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
105092226  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
105095705  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
105093433  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
105086098  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
105093042  DLD; dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
105097266  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105094769  LOW QUALITY PROTEIN: succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105095251  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105101808  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105102189  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
105107079  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
105100098  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
105094129  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
105099273  FH; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
105101816  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105089651  MDH2; malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
105104442  PC; pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
105102409  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
105098843  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
105089532  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
105095309  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
105089807  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
105094083  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cdk00010  Glycolysis / Gluconeogenesis
cdk00053  Ascorbate and aldarate metabolism
cdk00061  Fatty acid biosynthesis
cdk00062  Fatty acid elongation
cdk00071  Fatty acid degradation
cdk00190  Oxidative phosphorylation
cdk00220  Arginine biosynthesis
cdk00250  Alanine, aspartate and glutamate metabolism
cdk00280  Valine, leucine and isoleucine degradation
cdk00350  Tyrosine metabolism
cdk00470  D-Amino acid metabolism
cdk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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