KEGG   PATHWAY: cen00020
Entry
cen00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cedecea neteri ND14a
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cen00020  Citrate cycle (TCA cycle)
cen00020

Module
cen_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cen00020]
cen_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cen00020]
cen_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cen00020]
cen_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cen00020]
cen_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cen00020]
Other DBs
GO: 0006099
Organism
Cedecea neteri ND14a [GN:cen]
Gene
LH86_03030  [KO:K00024] [EC:1.1.1.37]
LH86_03770  [KO:K01610] [EC:4.1.1.49]
LH86_07230  [KO:K00247]
LH86_07235  [KO:K00246]
LH86_07240  [KO:K00245] [EC:1.3.5.1]
LH86_07245  [KO:K00244] [EC:1.3.5.1]
LH86_09115  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
LH86_09120  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
LH86_09125  [KO:K00382] [EC:1.8.1.4]
LH86_09135  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LH86_09885  [KO:K01676] [EC:4.2.1.2]
LH86_11095  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
LH86_11100  sdhC; succinate dehydrogenase [KO:K00241]
LH86_11105  sdhD; succinate dehydrogenase [KO:K00242]
LH86_11110  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
LH86_11115  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
LH86_11120  [KO:K00164] [EC:1.2.4.2]
LH86_11125  [KO:K00658] [EC:2.3.1.61]
LH86_11130  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
LH86_11135  [KO:K01902] [EC:6.2.1.5]
LH86_13335  [KO:K00031] [EC:1.1.1.42]
LH86_13410  [KO:K01675]
LH86_14365  [KO:K01676] [EC:4.2.1.2]
LH86_14370  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LH86_15360  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
LH86_16940  [KO:K27802]
LH86_17570  [KO:K00116] [EC:1.1.5.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cen00010  Glycolysis / Gluconeogenesis
cen00053  Ascorbate and aldarate metabolism
cen00061  Fatty acid biosynthesis
cen00071  Fatty acid degradation
cen00190  Oxidative phosphorylation
cen00220  Arginine biosynthesis
cen00250  Alanine, aspartate and glutamate metabolism
cen00280  Valine, leucine and isoleucine degradation
cen00350  Tyrosine metabolism
cen00470  D-Amino acid metabolism
cen00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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