KEGG   PATHWAY: cgib00030
Entry
cgib00030                   Pathway                                
Name
Pentose phosphate pathway - Carassius gibelio (silver crucian carp)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cgib00030  Pentose phosphate pathway
cgib00030

Module
cgib_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cgib00030]
cgib_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:cgib00030]
cgib_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cgib00030]
cgib_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cgib00030]
Other DBs
GO: 0006098
Organism
Carassius gibelio (silver crucian carp) [GN:cgib]
Gene
127947132  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
127977664  glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
128014362  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
127944567  glucose-6-phosphate 1-dehydrogenase-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
128011261  glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
127952089  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
127953132  6-phosphogluconolactonase-like [KO:K01057] [EC:3.1.1.31]
127959241  GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
128015869  GDH/6PGL endoplasmic bifunctional protein-like [KO:K13937] [EC:1.1.1.47 3.1.1.31]
127945112  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
128011963  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
127964333  ribulose-phosphate 3-epimerase-like [KO:K01783] [EC:5.1.3.1]
128019793  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
127944438  transketolase-like [KO:K00615] [EC:2.2.1.1]
127967821  transketolase [KO:K00615] [EC:2.2.1.1]
128022119  transketolase-like [KO:K00615] [EC:2.2.1.1]
128011572  transketolase-like [KO:K00615] [EC:2.2.1.1]
127934575  transaldolase [KO:K00616] [EC:2.2.1.2]
127977697  transaldolase-like [KO:K00616] [EC:2.2.1.2]
127970797  ribose-5-phosphate isomerase-like isoform X1 [KO:K01807] [EC:5.3.1.6]
128026365  ribose-5-phosphate isomerase-like [KO:K01807] [EC:5.3.1.6]
128000853  sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
127956786  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
127976041  deoxyribose-phosphate aldolase-like [KO:K01619] [EC:4.1.2.4]
127975853  ribokinase isoform X1 [KO:K00852] [EC:2.7.1.15]
127960166  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
128015626  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
128025472  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
127965111  phosphopentomutase-like [KO:K15779] [EC:5.4.2.2 5.4.2.7]
127948819  phosphopentomutase-like [KO:K15779] [EC:5.4.2.2 5.4.2.7]
127970994  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
127957547  ribose-phosphate pyrophosphokinase 1-like isoform X1 [KO:K00948] [EC:2.7.6.1]
128026889  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
128011723  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
127960272  regucalcin [KO:K01053] [EC:3.1.1.17]
128016152  regucalcin-like [KO:K01053] [EC:3.1.1.17]
127959993  glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
128015839  glycerate kinase-like [KO:K11529] [EC:2.7.1.165]
127942001  fructose-bisphosphate aldolase C-like [KO:K01623] [EC:4.1.2.13]
127951778  fructose-bisphosphate aldolase A [KO:K01623] [EC:4.1.2.13]
127971905  fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
127953560  fructose-bisphosphate aldolase A-like [KO:K01623] [EC:4.1.2.13]
127972649  fructose-bisphosphate aldolase C-A isoform X1 [KO:K01623] [EC:4.1.2.13]
128025068  aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
127986070  fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
128027804  fructose-bisphosphate aldolase B-like [KO:K01623] [EC:4.1.2.13]
128029345  fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
127957220  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
127957689  fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
127957690  fructose-1,6-bisphosphatase 1-like isoform X1 [KO:K03841] [EC:3.1.3.11]
127999972  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
128000004  fructose-1,6-bisphosphatase isozyme 2-like [KO:K03841] [EC:3.1.3.11]
128005527  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
127970928  ATP-dependent 6-phosphofructokinase, muscle type-like [KO:K00850] [EC:2.7.1.11]
127946252  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
127968118  ATP-dependent 6-phosphofructokinase, liver type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
127935404  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
127950779  ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
128021952  ATP-dependent 6-phosphofructokinase, liver type-like [KO:K00850] [EC:2.7.1.11]
128015749  ATP-dependent 6-phosphofructokinase, muscle type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
128011071  phosphofructokinase, muscle a [KO:K00850] [EC:2.7.1.11]
128013044  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
128020263  ATP-dependent 6-phosphofructokinase, liver type isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
cgib00010  Glycolysis / Gluconeogenesis
cgib00040  Pentose and glucuronate interconversions
cgib00052  Galactose metabolism
cgib00230  Purine metabolism
cgib00240  Pyrimidine metabolism
cgib00340  Histidine metabolism
cgib00630  Glyoxylate and dicarboxylate metabolism
cgib00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system