KEGG   PATHWAY: cgib00515
Entry
cgib00515                   Pathway                                
Name
Mannose type O-glycan biosynthesis - Carassius gibelio (silver crucian carp)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
cgib00515  Mannose type O-glycan biosynthesis
cgib00515

Module
cgib_M00872  O-glycan biosynthesis, mannose type (core M3) [PATH:cgib00515]
Other DBs
GO: 0035269
Organism
Carassius gibelio (silver crucian carp) [GN:cgib]
Gene
127958105  LOW QUALITY PROTEIN: protein O-mannosyl-transferase 1 [KO:K00728] [EC:2.4.1.109]
127975896  protein O-mannosyl-transferase 2 isoform X1 [KO:K00728] [EC:2.4.1.109]
127998805  protein O-mannosyl-transferase 1 [KO:K00728] [EC:2.4.1.109]
127960207  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like [KO:K09666] [EC:2.4.1.-]
127971459  beta-1,4-galactosyltransferase 1 isoform X1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
127976547  beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
127949703  beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
128027614  beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
128027620  beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
127951700  beta-1,4-galactosyltransferase 2-like [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
128030792  beta-1,4-galactosyltransferase 2-like [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
127944238  beta-1,4-galactosyltransferase 3-like [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
127975011  beta-1,4-galactosyltransferase 3-like [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
128011322  beta-1,4-galactosyltransferase 3 isoform X1 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
128030701  si:dkey-199f5.8; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
127951046  ST3 beta-galactoside alpha-2,3-sialyltransferase 3b isoform X1 [KO:K00781] [EC:2.4.3.6]
127960173  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like isoform X1 [KO:K00781] [EC:2.4.3.6]
128015249  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like isoform X1 [KO:K00781] [EC:2.4.3.6]
128026497  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like isoform X1 [KO:K00781] [EC:2.4.3.6]
127934018  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1 [KO:K00735] [EC:2.4.1.135]
127966430  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [KO:K00735] [EC:2.4.1.135]
127976925  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1 [KO:K00735] [EC:2.4.1.135]
128020955  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like [KO:K00735] [EC:2.4.1.135]
127970028  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2-like [KO:K10157] [EC:2.4.1.135]
128026169  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2-like [KO:K10157] [EC:2.4.1.135]
127948692  carbohydrate sulfotransferase 10 isoform X1 [KO:K09674] [EC:2.8.2.-]
127933587  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like [KO:K03663] [EC:2.4.1.152]
127975993  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 [KO:K03663] [EC:2.4.1.152]
127953127  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like [KO:K09661] [EC:2.4.1.-]
127944846  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like [KO:K09661] [EC:2.4.1.-]
127975034  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 isoform X1 [KO:K18207] [EC:2.4.1.312]
128030866  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like isoform X1 [KO:K18207] [EC:2.4.1.312]
127970406  UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 isoform X1 [KO:K09654] [EC:2.4.1.313]
127969639  protein O-mannose kinase [KO:K17547] [EC:2.7.1.183]
127972749  D-ribitol-5-phosphate cytidylyltransferase isoform X1 [KO:K21031] [EC:2.7.7.40]
127958780  fukutin isoform X1 [KO:K19872] [EC:2.7.8.-]
127972445  fukutin-related protein [KO:K19873] [EC:2.7.8.-]
127934261  ribitol-5-phosphate xylosyltransferase 1 [KO:K21052] [EC:2.4.2.61]
127976937  ribitol-5-phosphate xylosyltransferase 1 [KO:K21052] [EC:2.4.2.61]
127961407  beta-1,4-glucuronyltransferase 1-like [KO:K21032] [EC:2.4.1.-]
128017422  beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
127972208  xylosyl- and glucuronyltransferase LARGE1-like [KO:K09668] [EC:2.4.2.- 2.4.1.-]
127956425  xylosyl- and glucuronyltransferase LARGE1 isoform X1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
127934586  xylosyl- and glucuronyltransferase LARGE2s [KO:K09668] [EC:2.4.2.- 2.4.1.-]
127977483  xylosyl- and glucuronyltransferase LARGE2s-like [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026   
G13027   
G13028   
G13082   
G13083   
G13084  O-Mannose core M1
G13085   
G13086  O-Mannose core M2
G13087   
G13088   
G13089   
G13090   
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093   
G13094   
G13095   
G13096   
G13097   
G13098   
G13099   
G13100   
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
cgib00510  N-Glycan biosynthesis
KO pathway
ko00515   
LinkDB

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