KEGG   PATHWAY: cgib00510
Entry
cgib00510                   Pathway                                
Name
N-Glycan biosynthesis - Carassius gibelio (silver crucian carp)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
cgib00510  N-Glycan biosynthesis
cgib00510

Module
cgib_M00055  N-glycan precursor biosynthesis [PATH:cgib00510]
cgib_M00073  N-glycan precursor trimming [PATH:cgib00510]
cgib_M00075  N-glycan biosynthesis, complex type [PATH:cgib00510]
Other DBs
GO: 0006487
Organism
Carassius gibelio (silver crucian carp) [GN:cgib]
Gene
127984218  polyprenol reductase-like [KO:K12345] [EC:1.3.1.22 1.3.1.94]
127938786  polyprenol reductase-like [KO:K12345] [EC:1.3.1.22 1.3.1.94]
127941669  dolichol kinase-like [KO:K00902] [EC:2.7.1.108]
127986196  dolichol kinase-like [KO:K00902] [EC:2.7.1.108]
127958291  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [KO:K01001] [EC:2.7.8.15]
128008033  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like [KO:K01001] [EC:2.7.8.15]
127966478  dolichyl-phosphate beta-glucosyltransferase [KO:K00729] [EC:2.4.1.117]
128021052  dolichyl-phosphate beta-glucosyltransferase-like [KO:K00729] [EC:2.4.1.117]
127971954  zgc:92907; UDP-N-acetylglucosamine transferase subunit ALG13 homolog [KO:K07432] [EC:2.4.1.141]
128026961  UDP-N-acetylglucosamine transferase subunit ALG13 homolog [KO:K07432] [EC:2.4.1.141]
127985394  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1 [KO:K07432] [EC:2.4.1.141]
127946091  UDP-N-acetylglucosamine transferase subunit ALG14 homolog [KO:K07441] [EC:2.4.1.141]
128012836  UDP-N-acetylglucosamine transferase subunit ALG14 homolog [KO:K07441] [EC:2.4.1.141]
127944260  dolichol-phosphate mannosyltransferase subunit 1-like [KO:K00721] [EC:2.4.1.83]
128011603  dolichol-phosphate mannosyltransferase subunit 1-like [KO:K00721] [EC:2.4.1.83]
127957398  dolichol phosphate-mannose biosynthesis regulatory protein-like [KO:K09658]
128007736  dolichol phosphate-mannose biosynthesis regulatory protein-like isoform X1 [KO:K09658]
127979712  dolichol-phosphate mannosyltransferase subunit 3-like [KO:K09659]
127935332  dolichol-phosphate mannosyltransferase subunit 3-like [KO:K09659]
127953767  chitobiosyldiphosphodolichol beta-mannosyltransferase-like [KO:K03842] [EC:2.4.1.142]
127948873  chitobiosyldiphosphodolichol beta-mannosyltransferase-like [KO:K03842] [EC:2.4.1.142]
127975126  alpha-1,3/1,6-mannosyltransferase ALG2 [KO:K03843] [EC:2.4.1.132 2.4.1.257]
127949617  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [KO:K03844] [EC:2.4.1.131]
127951188  dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase-like [KO:K03845] [EC:2.4.1.258]
127934919  dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase-like isoform X1 [KO:K03845] [EC:2.4.1.258]
127958613  alpha-1,2-mannosyltransferase ALG9 isoform X1 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
127994526  alpha-1,2-mannosyltransferase ALG9-like isoform X1 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
127956944  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X1 [KO:K03847] [EC:2.4.1.260]
127959933  dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
127941842  probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
127986535  probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
127972635  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase-like [KO:K03850] [EC:2.4.1.256]
127956946  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [KO:K03850] [EC:2.4.1.256]
127966264  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
127975128  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [KO:K07151] [EC:2.4.99.18]
127935738  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like [KO:K07151] [EC:2.4.99.18]
128020950  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like [KO:K07151] [EC:2.4.99.18]
128030463  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like [KO:K07151] [EC:2.4.99.18]
127968226  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [KO:K12666]
128022584  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [KO:K12666]
127967984  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X1 [KO:K12667]
128022634  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X1 [KO:K12667]
127937357  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
127950950  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1-like [KO:K12668]
128011772  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
127944903  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [KO:K12670]
128012130  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
127970992  magnesium transporter protein 1-like [KO:K19478]
128026888  magnesium transporter protein 1 [KO:K19478]
127948508  tumor suppressor candidate 3 [KO:K19478]
127969259  tumor suppressor candidate 3 [KO:K19478]
127947484  transmembrane protein 258 [KO:K26502]
128014183  transmembrane protein 258 [KO:K26502]
127941638  dolichyldiphosphatase 1-like isoform X1 [KO:K07252] [EC:3.6.1.43]
127985809  dolichyldiphosphatase 1-like [KO:K07252] [EC:3.6.1.43]
127949248  mannosyl-oligosaccharide glucosidase-like isoform X1 [KO:K01228] [EC:3.2.1.106]
128019106  mannosyl-oligosaccharide glucosidase-like [KO:K01228] [EC:3.2.1.106]
127970950  neutral alpha-glucosidase AB-like isoform X1 [KO:K05546] [EC:3.2.1.207]
127957918  neutral alpha-glucosidase AB isoform X1 [KO:K05546] [EC:3.2.1.207]
128027518  neutral alpha-glucosidase AB-like [KO:K05546] [EC:3.2.1.207]
127942375  endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like isoform X1 [KO:K23741] [EC:3.2.1.209]
127957672  endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like [KO:K23741] [EC:3.2.1.209]
127986268  endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like [KO:K23741] [EC:3.2.1.209]
128009014  endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like [KO:K23741] [EC:3.2.1.209]
127983482  mannosyl-oligosaccharide 1,2-alpha-mannosidase IA-like [KO:K01230] [EC:3.2.1.113]
127964879  mannosyl-oligosaccharide 1,2-alpha-mannosidase IB-like [KO:K01230] [EC:3.2.1.113]
127975424  mannosyl-oligosaccharide 1,2-alpha-mannosidase IA isoform X1 [KO:K01230] [EC:3.2.1.113]
127938301  mannosyl-oligosaccharide 1,2-alpha-mannosidase IA-like [KO:K01230] [EC:3.2.1.113]
128019693  mannosyl-oligosaccharide 1,2-alpha-mannosidase IB-like [KO:K01230] [EC:3.2.1.113]
128030323  mannosyl-oligosaccharide 1,2-alpha-mannosidase IA-like isoform X1 [KO:K01230] [EC:3.2.1.113]
127979004  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like isoform X1 [KO:K00726] [EC:2.4.1.101]
127953782  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [KO:K00726] [EC:2.4.1.101]
127973089  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [KO:K00726] [EC:2.4.1.101]
127935643  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like isoform X1 [KO:K00726] [EC:2.4.1.101]
128028955  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase a [KO:K00726] [EC:2.4.1.101]
127946829  alpha-mannosidase 2x-like isoform X1 [KO:K01231] [EC:3.2.1.114]
127958588  alpha-mannosidase 2-like [KO:K01231] [EC:3.2.1.114]
128014540  alpha-mannosidase 2x isoform X1 [KO:K01231] [EC:3.2.1.114]
127994174  alpha-mannosidase 2-like [KO:K01231] [EC:3.2.1.114]
127984006  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [KO:K00736] [EC:2.4.1.143]
127984062  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [KO:K00736] [EC:2.4.1.143]
127938115  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [KO:K00736] [EC:2.4.1.143]
127938718  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [KO:K00736] [EC:2.4.1.143]
127983686  alpha-(1,6)-fucosyltransferase-like [KO:K00717] [EC:2.4.1.68]
127933373  alpha-(1,6)-fucosyltransferase-like [KO:K00717] [EC:2.4.1.68]
127976039  alpha-(1,6)-fucosyltransferase-like [KO:K00717] [EC:2.4.1.68]
127938087  alpha-(1,6)-fucosyltransferase-like [KO:K00717] [EC:2.4.1.68]
127971459  beta-1,4-galactosyltransferase 1 isoform X1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
127976547  beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
127949703  beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
128027614  beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
128027620  beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
127951700  beta-1,4-galactosyltransferase 2-like [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
128030792  beta-1,4-galactosyltransferase 2-like [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
127944238  beta-1,4-galactosyltransferase 3-like [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
127975011  beta-1,4-galactosyltransferase 3-like [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
128011322  beta-1,4-galactosyltransferase 3 isoform X1 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
128030701  si:dkey-199f5.8; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
127941647  beta-galactoside alpha-2,6-sialyltransferase 1-like [KO:K00778] [EC:2.4.3.1]
127985654  beta-galactoside alpha-2,6-sialyltransferase 1-like isoform X1 [KO:K00778] [EC:2.4.3.1]
127964863  beta-galactoside alpha-2,6-sialyltransferase 2 [KO:K00779] [EC:2.4.3.1]
127959704  beta-galactoside alpha-2,6-sialyltransferase 2b isoform X1 [KO:K00779] [EC:2.4.3.1]
128015429  beta-galactoside alpha-2,6-sialyltransferase 2-like [KO:K00779] [EC:2.4.3.1]
128019426  beta-galactoside alpha-2,6-sialyltransferase 2-like [KO:K00779] [EC:2.4.3.1]
127953014  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase a [KO:K00737] [EC:2.4.1.144]
127945884  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
127959409  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X1 [KO:K00737] [EC:2.4.1.144]
128015296  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
127971597  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [KO:K00738] [EC:2.4.1.145]
127971665  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B-like [KO:K00738] [EC:2.4.1.145]
127964716  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A-like isoform X1 [KO:K00738] [EC:2.4.1.145]
128026933  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B-like [KO:K00738] [EC:2.4.1.145]
128027571  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B-like [KO:K00738] [EC:2.4.1.145]
128019421  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A-like [KO:K00738] [EC:2.4.1.145]
127942982  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A [KO:K00744] [EC:2.4.1.155]
127987986  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like [KO:K00744] [EC:2.4.1.155]
127953127  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like [KO:K09661] [EC:2.4.1.-]
127944846  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like [KO:K09661] [EC:2.4.1.-]
127945053  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like [KO:K13748] [EC:2.4.1.201 2.4.1.145]
127934730  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like [KO:K13748] [EC:2.4.1.201 2.4.1.145]
127976983  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like [KO:K13748] [EC:2.4.1.201 2.4.1.145]
128011538  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like [KO:K13748] [EC:2.4.1.201 2.4.1.145]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003   
G00004   
G00005   
G00006   
G00007   
G00008   
G00009   
G00010   
G00011   
G00012   
G00013   
G00014   
G00015   
G00016  Core fucose
G00017   
G00018  DS 3
G00019   
G00020   
G00021   
G00022   
G00171   
G10526   
G10595   
G10596   
G10597   
G10598   
G10599   
G10694   
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
cgib00051  Fructose and mannose metabolism
cgib00511  Other glycan degradation
cgib00513  Various types of N-glycan biosynthesis
cgib00515  Mannose type O-glycan biosynthesis
cgib00520  Amino sugar and nucleotide sugar metabolism
cgib00533  Glycosaminoglycan biosynthesis - keratan sulfate
cgib00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
cgib00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   
LinkDB

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