KEGG   PATHWAY: char03050
Entry
char03050                   Pathway                                
Name
Proteasome - Clupea harengus (Atlantic herring)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
char03050  Proteasome
char03050

Other DBs
GO: 0000502
Organism
Clupea harengus (Atlantic herring) [GN:char]
Gene
105888850  psme3; proteasome activator complex subunit 3 [KO:K06698]
105888866  psmd11b; 26S proteasome non-ATPase regulatory subunit 11B [KO:K03036]
105888920  psmb12; proteasome 20S subunit beta 12 [KO:K02738] [EC:3.4.25.1]
105888923  psmb8a; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
105889087  psma4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
105890240  psme1; proteasome activator complex subunit 1 [KO:K06696]
105890578  psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
105891449  psmb6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
105891919  psmc4; 26S proteasome regulatory subunit 6B isoform X1 [KO:K03063]
105892166  psmb2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
105892365  psmb13a; proteasome 20S subunit beta 13a [KO:K02739] [EC:3.4.25.1]
105892942  [KO:K03062]
105892968  psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
105892973  [KO:K02730] [EC:3.4.25.1]
105893942  psmb11b; proteasome subunit beta type-11b [KO:K11598] [EC:3.4.25.1]
105894259  [KO:K02737] [EC:3.4.25.1]
105894265  [KO:K06691]
105894498  psmd9; 26S proteasome non-ATPase regulatory subunit 9 isoform X1 [KO:K06693]
105894933  [KO:K03062]
105896964  psme4b; proteasome activator complex subunit 4B isoform X1 [KO:K06699]
105898150  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
105898474  [KO:K11599]
105899024  adrm1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
105899631  psma3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
105899676  psma6a; proteasome subunit alpha type-6a [KO:K02730] [EC:3.4.25.1]
105899702  psme4a; proteasome activator complex subunit 4A isoform X1 [KO:K06699]
105899973  [KO:K06698]
105900224  psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
105900601  [KO:K02731] [EC:3.4.25.1]
105901484  psmd4a; 26S proteasome non-ATPase regulatory subunit 4a [KO:K03029]
105901691  [KO:K03029]
105901911  psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
105903037  [KO:K02731] [EC:3.4.25.1]
105903053  psmb9a; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
105904410  psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
105904820  psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
105904927  sem1; 26S proteasome complex subunit SEM1 [KO:K10881]
105905236  psme2; proteasome activator complex subunit 2 [KO:K06697]
105905337  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
105906514  psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
105906904  psmb11a; proteasome subunit beta type-11a [KO:K11598] [EC:3.4.25.1]
105906905  psmb5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
105907112  psma8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
105908117  psmc3; 26S proteasome regulatory subunit 6A isoform X1 [KO:K03065]
105908963  [KO:K03036]
105909123  psmc5; 26S proteasome regulatory subunit 8 [KO:K03066]
105909715  psma6l; proteasome 20S subunit alpha 6, like [KO:K02730] [EC:3.4.25.1]
105910482  psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
105911109  psmb7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
105911246  psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
105911297  psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
105911303  psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
105911625  psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
105911905  psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
105912266  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
105912501  psmb10; proteasome subunit beta type-10 [KO:K02739] [EC:3.4.25.1]
105913181  psmd1; 26S proteasome non-ATPase regulatory subunit 1 isoform X1 [KO:K03032]
122129484  psma2a; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
122131096  [KO:K02738] [EC:3.4.25.1]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
char04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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