KEGG   PATHWAY: chim00020
Entry
chim00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chitinophaga sp. MD30
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chim00020  Citrate cycle (TCA cycle)
chim00020

Module
chim_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:chim00020]
chim_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:chim00020]
chim_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:chim00020]
chim_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chim00020]
chim_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chim00020]
Other DBs
GO: 0006099
Organism
Chitinophaga sp. MD30 [GN:chim]
Gene
CK934_00410  [KO:K00627] [EC:2.3.1.12]
CK934_00675  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CK934_02420  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CK934_06405  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CK934_07180  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CK934_07475  [KO:K01902] [EC:6.2.1.5]
CK934_10400  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CK934_10780  [KO:K00116] [EC:1.1.5.4]
CK934_12090  [KO:K27802]
CK934_12700  [KO:K00162] [EC:1.2.4.1]
CK934_12870  [KO:K00658] [EC:2.3.1.61]
CK934_18585  [KO:K01958] [EC:6.4.1.1]
CK934_18735  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CK934_25255  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CK934_25490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CK934_26970  [KO:K00240] [EC:1.3.5.1]
CK934_26975  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CK934_26980  [KO:K00241]
CK934_27410  [KO:K00031] [EC:1.1.1.42]
CK934_27415  [KO:K00031] [EC:1.1.1.42]
CK934_27480  [KO:K01903] [EC:6.2.1.5]
CK934_28250  [KO:K00658] [EC:2.3.1.61]
CK934_28255  [KO:K00164] [EC:1.2.4.2]
CK934_28790  [KO:K01647] [EC:2.3.3.1]
CK934_28880  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chim00010  Glycolysis / Gluconeogenesis
chim00053  Ascorbate and aldarate metabolism
chim00061  Fatty acid biosynthesis
chim00071  Fatty acid degradation
chim00190  Oxidative phosphorylation
chim00220  Arginine biosynthesis
chim00250  Alanine, aspartate and glutamate metabolism
chim00280  Valine, leucine and isoleucine degradation
chim00350  Tyrosine metabolism
chim00470  D-Amino acid metabolism
chim00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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