KEGG   PATHWAY: cib00970
Entry
cib00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Citrobacter sp. TSA-1
Class
Genetic Information Processing; Translation
Pathway map
cib00970  Aminoacyl-tRNA biosynthesis
cib00970

Organism
Citrobacter sp. TSA-1 [GN:cib]
Gene
HF677_000325  [KO:K14238]
HF677_000670  selA; L-seryl-tRNA(Sec) selenium transferase [KO:K01042] [EC:2.9.1.1]
HF677_000780  glyQ; glycine--tRNA ligase subunit alpha [KO:K01878] [EC:6.1.1.14]
HF677_000785  glyS; glycine--tRNA ligase subunit beta [KO:K01879] [EC:6.1.1.14]
HF677_000870  [KO:K14232]
HF677_001565  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
HF677_001980  fmt; methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
HF677_002030  [KO:K14227]
HF677_002035  [KO:K14218]
HF677_002050  [KO:K14234]
HF677_002535  [KO:K14228]
HF677_002545  [KO:K14230]
HF677_003090  [KO:K14230]
HF677_003795  [KO:K14231]
HF677_004185  lysS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
HF677_004200  [KO:K14225]
HF677_004500  [KO:K14230]
HF677_004505  [KO:K14230]
HF677_004510  [KO:K14230]
HF677_005250  alaS; alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
HF677_005260  [KO:K14233]
HF677_005265  [KO:K14219]
HF677_005270  [KO:K14219]
HF677_005275  [KO:K14219]
HF677_005280  [KO:K14219]
HF677_006100  [KO:K14224]
HF677_006500  hisS; histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
HF677_006970  [KO:K14229]
HF677_006975  [KO:K14237]
HF677_006980  [KO:K14237]
HF677_006985  [KO:K14237]
HF677_006990  gltX; glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
HF677_007005  [KO:K14218]
HF677_007010  [KO:K14218]
HF677_007185  [KO:K14219]
HF677_008100  [KO:K14232]
HF677_008535  metG; methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
HF677_009520  [KO:K14220]
HF677_009530  [KO:K14233]
HF677_009750  [KO:K14225]
HF677_009755  [KO:K14222]
HF677_009760  [KO:K14228]
HF677_010065  argS; arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
HF677_010105  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
HF677_010785  [KO:K14236]
HF677_010790  [KO:K14236]
HF677_012390  tyrS; tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
HF677_012580  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
HF677_012725  [KO:K14237]
HF677_012730  [KO:K14237]
HF677_013150  pheT; phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
HF677_013155  pheS; phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
HF677_013180  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
HF677_014390  [KO:K14220]
HF677_014400  [KO:K14220]
HF677_014420  [KO:K14220]
HF677_014800  [KO:K14233]
HF677_014980  [KO:K14233]
HF677_015190  asnS; asparagine--tRNA ligase [KO:K01893] [EC:6.1.1.22]
HF677_015390  serS; serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
HF677_015460  [KO:K14233]
HF677_016080  [KO:K14229]
HF677_016085  [KO:K14229]
HF677_016090  [KO:K14229]
HF677_016095  [KO:K14237]
HF677_016100  [KO:K14229]
HF677_016515  glnS; glutamine--tRNA ligase [KO:K01886] [EC:6.1.1.18]
HF677_016550  [KO:K14230]
HF677_016555  [KO:K14228]
HF677_016560  [KO:K14223]
HF677_016565  [KO:K14223]
HF677_016570  [KO:K14230]
HF677_016575  [KO:K14223]
HF677_016580  [KO:K14223]
HF677_016645  leuS; leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
HF677_017230  [KO:K14219]
HF677_017300  cysS; cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
HF677_018430  [KO:K14234]
HF677_018855  [KO:K14221]
HF677_018910  [KO:K14221]
HF677_018925  [KO:K14224]
HF677_018965  proS; proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
HF677_019825  ileS; isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
HF677_020125  [KO:K14228]
HF677_020130  [KO:K14228]
HF677_020135  [KO:K14228]
HF677_020525  [KO:K14228]
HF677_020585  [KO:K01873] [EC:6.1.1.9]
HF677_020735  [KO:K01042] [EC:2.9.1.1]
HF677_021115  [KO:K14225]
HF677_021120  [KO:K14225]
HF677_021125  [KO:K14225]
HF677_021285  [KO:K14231]
HF677_022260  [KO:K14224]
HF677_022420  [KO:K14234]
HF677_022425  [KO:K14225]
HF677_022430  [KO:K14236]
HF677_022435  [KO:K14234]
HF677_022465  [KO:K14218]
HF677_022470  [KO:K14227]
HF677_023105  [KO:K14224]
HF677_024260  [KO:K14235]
HF677_024425  [KO:K14219]
HF677_024430  [KO:K14226]
HF677_024435  [KO:K14228]
HF677_024440  [KO:K14232]
HF677_024675  [KO:K14227]
HF677_024680  [KO:K14218]
HF677_024695  [KO:K14221]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
cib00250  Alanine, aspartate and glutamate metabolism
cib00260  Glycine, serine and threonine metabolism
cib00270  Cysteine and methionine metabolism
cib00290  Valine, leucine and isoleucine biosynthesis
cib00300  Lysine biosynthesis
cib00330  Arginine and proline metabolism
cib00340  Histidine metabolism
cib00380  Tryptophan metabolism
cib00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

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