KEGG   PATHWAY: cls00020
Entry
cls00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium sp. SY8519
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cls00020  Citrate cycle (TCA cycle)
cls00020

Module
cls_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cls00020]
cls_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cls00020]
Other DBs
GO: 0006099
Organism
Clostridium sp. SY8519 [GN:cls]
Gene
CXIVA_05070  GltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CXIVA_23650  hypothetical protein [KO:K05942] [EC:2.3.3.3]
CXIVA_17350  GltA; citrate synthase [KO:K01659] [EC:2.3.3.5]
CXIVA_23630  Icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CXIVA_11230  PorA; pyruvate:ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CXIVA_11240  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CXIVA_16260  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CXIVA_11250  hypothetical protein [KO:K00177] [EC:1.2.7.3]
CXIVA_11220  ferredoxin 3 [KO:K00176] [EC:1.2.7.3]
CXIVA_00890  hypothetical protein [KO:K00239] [EC:1.3.5.1]
CXIVA_16360  hypothetical protein [KO:K00239] [EC:1.3.5.1]
CXIVA_14380  hypothetical protein [KO:K01677] [EC:4.2.1.2]
CXIVA_09540  hypothetical protein [KO:K01677] [EC:4.2.1.2]
CXIVA_14390  hypothetical protein [KO:K01678] [EC:4.2.1.2]
CXIVA_09530  hypothetical protein [KO:K01678] [EC:4.2.1.2]
CXIVA_20610  hypothetical protein [KO:K01958] [EC:6.4.1.1]
CXIVA_07330  PckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CXIVA_20460  PorA; pyruvate:ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
CXIVA_20470  PorB; pyruvate:ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
CXIVA_20440  PorG; pyruvate:ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
CXIVA_20450  pyruvate:ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
CXIVA_21000  hypothetical protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cls00010  Glycolysis / Gluconeogenesis
cls00053  Ascorbate and aldarate metabolism
cls00061  Fatty acid biosynthesis
cls00062  Fatty acid elongation
cls00071  Fatty acid degradation
cls00190  Oxidative phosphorylation
cls00220  Arginine biosynthesis
cls00250  Alanine, aspartate and glutamate metabolism
cls00280  Valine, leucine and isoleucine degradation
cls00350  Tyrosine metabolism
cls00470  D-Amino acid metabolism
cls00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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