KEGG   PATHWAY: comm00260
Entry
comm00260                   Pathway                                
Name
Glycine, serine and threonine metabolism - Commensalibacter melissae ESL0284
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
comm00260  Glycine, serine and threonine metabolism
comm00260

Module
comm_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:comm00260]
comm_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:comm00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Commensalibacter melissae ESL0284 [GN:comm]
Gene
GN303_00965  aspartate kinase [KO:K00928] [EC:2.7.2.4]
GN303_08110  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
GN303_01115  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
GN303_06925  homoserine kinase [KO:K02204] [EC:2.7.1.39]
GN303_05720  threonine synthase [KO:K01733] [EC:4.2.3.1]
GN303_04200  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
GN303_06595  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
GN303_04545  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
GN303_01610  phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
GN303_03555  serB; phosphoserine phosphatase SerB [KO:K01079] [EC:3.1.3.3]
GN303_02830  SDR family NAD(P)-dependent oxidoreductase [KO:K16066] [EC:1.1.1.381 1.1.1.-]
GN303_07320  hemA; 5-aminolevulinate synthase [KO:K00643] [EC:2.3.1.37]
GN303_08090  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GN303_06435  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
GN303_06580  threonine ammonia-lyase [KO:K01754] [EC:4.3.1.19]
GN303_08555  tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
GN303_08550  trpB; tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
GN303_03415  aminotransferase class V-fold PLP-dependent enzyme [KO:K13745] [EC:4.1.1.86]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
comm00010  Glycolysis / Gluconeogenesis
comm00020  Citrate cycle (TCA cycle)
comm00230  Purine metabolism
comm00250  Alanine, aspartate and glutamate metabolism
comm00270  Cysteine and methionine metabolism
comm00290  Valine, leucine and isoleucine biosynthesis
comm00300  Lysine biosynthesis
comm00330  Arginine and proline metabolism
comm00460  Cyanoamino acid metabolism
comm00470  D-Amino acid metabolism
comm00564  Glycerophospholipid metabolism
comm00620  Pyruvate metabolism
comm00630  Glyoxylate and dicarboxylate metabolism
comm00640  Propanoate metabolism
comm00680  Methane metabolism
comm00860  Porphyrin metabolism
comm00920  Sulfur metabolism
KO pathway
ko00260   
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