KEGG   PATHWAY: comm00230
Entry
comm00230                   Pathway                                
Name
Purine metabolism - Commensalibacter melissae ESL0284
Class
Metabolism; Nucleotide metabolism
Pathway map
comm00230  Purine metabolism
comm00230

Module
comm_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:comm00230]
comm_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:comm00230]
comm_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:comm00230]
comm_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:comm00230]
comm_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:comm00230]
Other DBs
GO: 0006163 0042278
Organism
Commensalibacter melissae ESL0284 [GN:comm]
Gene
GN303_07970  NUDIX domain-containing protein [KO:K01515] [EC:3.6.1.13 3.6.1.-]
GN303_01230  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
GN303_02505  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
GN303_08200  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
GN303_05475  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
GN303_04590  purL; phosphoribosylformylglycinamidine synthase subunit PurL [KO:K23269] [EC:6.3.5.3]
GN303_04605  purS; phosphoribosylformylglycinamidine synthase subunit PurS [KO:K23264] [EC:6.3.5.3]
GN303_04595  purQ; phosphoribosylformylglycinamidine synthase subunit PurQ [KO:K23265] [EC:6.3.5.3 3.5.1.2]
GN303_05470  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
GN303_05190  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
GN303_05185  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
GN303_04610  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
GN303_04615  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
GN303_08700  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
GN303_00335  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
GN303_04265  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
GN303_01220  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
GN303_04770  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
GN303_05480  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
GN303_02315  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
GN303_05035  xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
GN303_07000  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
GN303_08675  guanylate kinase [KO:K00942] [EC:2.7.4.8]
GN303_06995  ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
GN303_07290  vitamin B12-dependent ribonucleotide reductase [KO:K00525] [EC:1.17.4.1]
GN303_06985  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
GN303_01985  anaerobic ribonucleoside triphosphate reductase [KO:K21636] [EC:1.1.98.6]
GN303_01460  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
GN303_05420  RelA/SpoT family protein [KO:K01139] [EC:2.7.6.5 3.1.7.2]
GN303_05455  Ppx/GppA family phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
GN303_04780  Ppx/GppA family phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
GN303_03500  hypothetical protein [KO:K01768] [EC:4.6.1.1]
GN303_01620  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
GN303_03360  TIGR00282 family metallophosphoesterase [KO:K09769] [EC:3.1.4.16]
GN303_06705  adenylate kinase [KO:K00939] [EC:2.7.4.3]
GN303_00585  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
GN303_00590  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
comm00030  Pentose phosphate pathway
comm00220  Arginine biosynthesis
comm00250  Alanine, aspartate and glutamate metabolism
comm00260  Glycine, serine and threonine metabolism
comm00340  Histidine metabolism
comm00630  Glyoxylate and dicarboxylate metabolism
comm00730  Thiamine metabolism
comm00740  Riboflavin metabolism
comm00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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