KEGG   PATHWAY: cpla00515
Entry
cpla00515                   Pathway                                
Name
Mannose type O-glycan biosynthesis - Chiloscyllium plagiosum (whitespotted bambooshark)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
cpla00515  Mannose type O-glycan biosynthesis
cpla00515

Module
cpla_M00872  O-glycan biosynthesis, mannose type (core M3) [PATH:cpla00515]
Other DBs
GO: 0035269
Organism
Chiloscyllium plagiosum (whitespotted bambooshark) [GN:cpla]
Gene
122555453  pomt2; protein O-mannosyl-transferase 2 isoform X1 [KO:K00728] [EC:2.4.1.109]
122564972  pomt1; protein O-mannosyl-transferase 1 isoform X1 [KO:K00728] [EC:2.4.1.109]
122554320  pomgnt1; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1 [KO:K09666] [EC:2.4.1.-]
122558311  beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
122554287  b4galt2; beta-1,4-galactosyltransferase 2 isoform X1 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
122565438  beta-1,4-galactosyltransferase 2-like isoform X1 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
122550586  beta-1,4-galactosyltransferase 3-like isoform X1 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
122554242  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like isoform X1 [KO:K00781] [EC:2.4.3.6]
122555033  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like isoform X1 [KO:K00735] [EC:2.4.1.135]
122540699  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like [KO:K00735] [EC:2.4.1.135]
122543314  b3gat2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 [KO:K10157] [EC:2.4.1.135]
122550639  chst10; carbohydrate sulfotransferase 10 isoform X1 [KO:K09674] [EC:2.8.2.-]
122546605  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like [KO:K03663] [EC:2.4.1.152]
122546617  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like [KO:K03663] [EC:2.4.1.152]
122546648  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like isoform X1 [KO:K03663] [EC:2.4.1.152]
122551134  alpha-(1,3)-fucosyltransferase 4-like [KO:K07632] [EC:2.4.1.-]
122562112  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B isoform X1 [KO:K09661] [EC:2.4.1.-]
122549243  pomgnt2; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [KO:K18207] [EC:2.4.1.312]
122542298  b3galnt2; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 isoform X1 [KO:K09654] [EC:2.4.1.313]
122539287  pomk; protein O-mannose kinase [KO:K17547] [EC:2.7.1.183]
122549790  crppa; D-ribitol-5-phosphate cytidylyltransferase [KO:K21031] [EC:2.7.7.40]
122563389  fktn; fukutin isoform X1 [KO:K19872] [EC:2.7.8.-]
122542812  fukutin-related protein [KO:K19873] [EC:2.7.8.-]
122559851  rxylt1; ribitol-5-phosphate xylosyltransferase 1 isoform X1 [KO:K21052] [EC:2.4.2.61]
122543792  b4gat1; beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
122559472  large1; LARGE xylosyl- and glucuronyltransferase 1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026   
G13027   
G13028   
G13082   
G13083   
G13084  O-Mannose core M1
G13085   
G13086  O-Mannose core M2
G13087   
G13088   
G13089   
G13090   
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093   
G13094   
G13095   
G13096   
G13097   
G13098   
G13099   
G13100   
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
cpla00510  N-Glycan biosynthesis
KO pathway
ko00515   
LinkDB

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