KEGG   PATHWAY: cpla03030
Entry
cpla03030                   Pathway                                
Name
DNA replication - Chiloscyllium plagiosum (whitespotted bambooshark)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
cpla03030  DNA replication
cpla03030

Organism
Chiloscyllium plagiosum (whitespotted bambooshark) [GN:cpla]
Gene
122541682  rnaseh1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
122542028  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
122542199  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
122543049  pcna; proliferating cell nuclear antigen [KO:K04802]
122543102  pold2; DNA polymerase delta subunit 2 [KO:K02328]
122543366  prim1; DNA primase small subunit isoform X1 [KO:K02684] [EC:2.7.7.102]
122543800  pola2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
122544362  mcm7; LOW QUALITY PROTEIN: DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
122546911  pold4; DNA polymerase delta subunit 4 [KO:K03505]
122548609  prim2; DNA primase large subunit [KO:K02685]
122549079  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
122549812  rpa3; replication protein A 14 kDa subunit [KO:K10740]
122550799  rfc3; replication factor C subunit 3 isoform X1 [KO:K10756]
122550977  pold3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
122551253  rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
122551696  [KO:K02542] [EC:5.6.2.3]
122552245  rnaseh2a; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
122552546  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
122553503  pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
122554963  rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
122555085  pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
122556234  rfc4; replication factor C subunit 4 isoform X1 [KO:K10755]
122556765  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
122558812  mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
122560999  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
122562599  pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
122562741  rfc5; replication factor C subunit 5 isoform X1 [KO:K10756]
122563922  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
122564159  rfc2; replication factor C subunit 2 isoform X1 [KO:K10755]
122564739  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
122565283  pole4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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