KEGG   PATHWAY: cpoo03440
Entry
cpoo03440                   Pathway                                
Name
Homologous recombination - Crocodylus porosus (Australian saltwater crocodile)
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
cpoo03440  Homologous recombination
cpoo03440

Other DBs
GO: 0000724
Organism
Crocodylus porosus (Australian saltwater crocodile) [GN:cpoo]
Gene
109305525  BRCA2; breast cancer type 2 susceptibility protein [KO:K08775]
109306698  ATM; serine-protein kinase ATM [KO:K04728] [EC:2.7.11.1]
109306759  MRE11; double-strand break repair protein MRE11A [KO:K10865]
109306827  XRCC2; LOW QUALITY PROTEIN: DNA repair protein XRCC2 [KO:K10879]
109306907  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
109307435  [KO:K10875] [EC:5.6.2.-]
109309045  SEM1; 26S proteasome complex subunit DSS1 [KO:K10881]
109309153  RPA3; replication protein A 14 kDa subunit [KO:K10740]
109309241  BLM; Bloom syndrome protein [KO:K10901] [EC:5.6.2.4]
109309855  RAD50; DNA repair protein RAD50 [KO:K10866] [EC:3.6.-.-]
109310241  UIMC1; BRCA1-A complex subunit RAP80 isoform X1 [KO:K20775]
109310950  BRCC3; lys-63-specific deubiquitinase BRCC36 [KO:K11864] [EC:3.4.19.-]
109311411  TOPBP1; DNA topoisomerase 2-binding protein 1 isoform X1 [KO:K10728]
109312788  TOP3B; DNA topoisomerase 3-beta-1 isoform X1 [KO:K03165] [EC:5.6.2.1]
109314590  PALB2; partner and localizer of BRCA2 isoform X1 [KO:K10897]
109314657  TOP3A; DNA topoisomerase 3-alpha [KO:K03165] [EC:5.6.2.1]
109315032  EME1; crossover junction endonuclease EME1 [KO:K10882] [EC:3.1.22.-]
109316468  RAD52; DNA repair protein RAD52 homolog isoform X1 [KO:K10873]
109316518  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
109316549  SYCP3; synaptonemal complex protein 3 isoform X1 [KO:K19528]
109316987  RAD51D; DNA repair protein RAD51 homolog 4 isoform X1 [KO:K10871]
109317161  BRIP1; Fanconi anemia group J protein [KO:K15362] [EC:5.6.2.3]
109317185  RAD51C; DNA repair protein RAD51 homolog 3 isoform X1 [KO:K10870]
109317263  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
109317969  RBBP8; DNA endonuclease RBBP8 [KO:K20773] [EC:3.1.-.-]
109318671  RPA2; replication protein A 32 kDa subunit [KO:K10739]
109318690  BABAM1; BRISC and BRCA1-A complex member 1 [KO:K20776]
109319813  BRE; BRCA1-A complex subunit BRE [KO:K12173]
109320218  NBN; nibrin isoform X1 [KO:K10867]
109320418  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
109320460  RAD54B; DNA repair and recombination protein RAD54B [KO:K10877] [EC:5.6.2.-]
109320612  XRCC3; DNA repair protein XRCC3 [KO:K10880]
109321237  RAD51B; DNA repair protein RAD51 homolog 2 isoform X1 [KO:K10869]
109321508  RAD51; DNA repair protein RAD51 homolog 1 [KO:K04482]
109321990  FAM175A; BRCA1-A complex subunit Abraxas isoform X1 [KO:K20774]
109323016  BARD1; BRCA1-associated RING domain protein 1 [KO:K10683]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   

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