KEGG   PATHWAY: csb00520
Entry
csb00520                    Pathway                                
Name
Amino sugar and nucleotide sugar metabolism - Clostridium saccharobutylicum
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
csb00520  Amino sugar and nucleotide sugar metabolism
csb00520

Module
csb_M00549  UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:csb00520]
csb_M00554  UDP-Gal biosynthesis, Gal => UDP-Gal [PATH:csb00520]
csb_M00909  UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH:csb00520]
csb_M00995  UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:csb00520]
Other DBs
GO: 0006040 0009225
Organism
Clostridium saccharobutylicum [GN:csb]
Gene
CLSA_c00920  galE1; UDP-glucose 4-epimerase GalE [KO:K01784] [EC:5.1.3.2]
CLSA_c01060  [KO:K04042] [EC:2.7.7.23 2.3.1.157]
CLSA_c02640  glmM; phosphoglucosamine mutase GlmM [KO:K03431] [EC:5.4.2.10]
CLSA_c02870  glmS; glutamine--fructose-6-phosphate aminotransferase [KO:K00820] [EC:2.6.1.16]
CLSA_c03520  manC; mannose-1-phosphate guanylyltransferase ManC [KO:K00971] [EC:2.7.7.13]
CLSA_c03710  pgi; glucose-6-phosphate isomerase Pgi [KO:K01810] [EC:5.3.1.9]
CLSA_c05070  [KO:K01791] [EC:5.1.3.14]
CLSA_c05180  murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 [KO:K00790] [EC:2.5.1.7]
CLSA_c06730  xynD1; arabinoxylan arabinofuranohydrolase XynD [KO:K15921] [EC:3.2.1.55]
CLSA_c06900  xynD2; arabinoxylan arabinofuranohydrolase XynD [KO:K15921] [EC:3.2.1.55]
CLSA_c08510  galT; galactose-1-phosphate uridylyltransferase GalT [KO:K00965] [EC:2.7.7.12]
CLSA_c08520  galE2; UDP-glucose 4-epimerase GalE [KO:K01784] [EC:5.1.3.2]
CLSA_c08530  galK; galactokinase GalK [KO:K00849] [EC:2.7.1.6]
CLSA_c09610  nagA; N-acetylglucosamine-6-phosphate deacetylase NagA [KO:K01443] [EC:3.5.1.25]
CLSA_c09630  nagB; glucosamine-6-phosphate deaminase NagB [KO:K02564] [EC:3.5.99.6]
CLSA_c09640  [KO:K02794] [EC:2.7.1.191]
CLSA_c09650  sorA1; sorbose permease IIC component SorA [KO:K02795]
CLSA_c09660  manZ1; mannose permease IID component ManZ [KO:K02796]
CLSA_c10070  [KO:K20118] [EC:2.7.1.199]
CLSA_c12290  pgcA1; phosphoglucomutase PgcA [KO:K01835] [EC:5.4.2.2]
CLSA_c12410  pmi; mannose-6-phosphate isomerase Pmi [KO:K01809] [EC:5.3.1.8]
CLSA_c20640  [KO:K02793] [EC:2.7.1.191]
CLSA_c20650  [KO:K02794] [EC:2.7.1.191]
CLSA_c20660  sorA2; sorbose permease IIC component SorA [KO:K02795]
CLSA_c20670  manZ2; mannose permease IID component ManZ [KO:K02796]
CLSA_c22110  [KO:K02794] [EC:2.7.1.191]
CLSA_c22120  sorA3; sorbose permease IIC component SorA [KO:K02795]
CLSA_c22130  manZ3; mannose permease IID component ManZ [KO:K02796]
CLSA_c28500  rmlA1; glucose-1-phosphate thymidylyltransferase RmlA [KO:K00973] [EC:2.7.7.24]
CLSA_c37450  chiA; chitinase A1 [KO:K01183] [EC:3.2.1.14]
CLSA_c41230  gtaB; UTP--glucose-1-phosphate uridylyltransferase GtaB [KO:K00963] [EC:2.7.7.9]
CLSA_c41620  crr; glucose-specific phosphotransferase enzyme IIA component Crr [KO:K02777] [EC:2.7.1.-]
CLSA_c41690  yfnG; putative sugar dehydratase/epimerase YfnG [KO:K08678] [EC:4.1.1.35]
CLSA_c42220  yngB; UTP--glucose-1-phosphate uridylyltransferase YngB [KO:K00963] [EC:2.7.7.9]
CLSA_c42240  pgcA2; phosphoglucomutase PgcA [KO:K01835] [EC:5.4.2.2]
CLSA_c42280  rmlA2; glucose-1-phosphate thymidylyltransferase RmlA [KO:K00973] [EC:2.7.7.24]
CLSA_c42360  [KO:K00971] [EC:2.7.7.13]
CLSA_c42970  murB; UDP-N-acetylenolpyruvoylglucosamine reductase MurB [KO:K00075] [EC:1.3.1.98]
CLSA_c43480  glcK; glucokinase GlcK [KO:K25026]
CLSA_c43770  glgD; glycogen biosynthesis protein GlgD [KO:K00975] [EC:2.7.7.27]
CLSA_c43780  glgC; glucose-1-phosphate adenylyltransferase GlgC [KO:K00975] [EC:2.7.7.27]
CLSA_c43870  [KO:K02777] [EC:2.7.1.-]
CLSA_c43880  [KO:K20118] [EC:2.7.1.199]
CLSA_c44270  ydjE; sugar kinase YdjE [KO:K00847] [EC:2.7.1.4]
CLSA_c44690  [KO:K02793] [EC:2.7.1.191]
CLSA_c44700  [KO:K02794] [EC:2.7.1.191]
CLSA_c45100  murA1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 [KO:K00790] [EC:2.5.1.7]
Compound
C00029  UDP-glucose
C00031  D-Glucose
C00043  UDP-N-acetyl-alpha-D-glucosamine
C00052  UDP-alpha-D-galactose
C00085  D-Fructose 6-phosphate
C00095  D-Fructose
C00096  GDP-mannose
C00103  D-Glucose 1-phosphate
C00140  N-Acetyl-D-glucosamine
C00159  D-Mannose
C00167  UDP-glucuronate
C00181  D-Xylose
C00190  UDP-D-xylose
C00191  D-Glucuronate
C00203  UDP-N-acetyl-D-galactosamine
C00216  D-Arabinose
C00259  L-Arabinose
C00267  alpha-D-Glucose
C00275  D-Mannose 6-phosphate
C00325  GDP-L-fucose
C00329  D-Glucosamine
C00333  D-Galacturonate
C00352  D-Glucosamine 6-phosphate
C00357  N-Acetyl-D-glucosamine 6-phosphate
C00394  GDP-glucose
C00446  alpha-D-Galactose 1-phosphate
C00461  Chitin
C00498  ADP-glucose
C00501  CDP-glucose
C00617  UDP-D-galacturonate
C00636  D-Mannose 1-phosphate
C00645  N-Acetyl-D-mannosamine
C00668  alpha-D-Glucose 6-phosphate
C00714  Pectin
C00734  Chitosan
C00842  dTDP-glucose
C00935  UDP-L-arabinose
C00976  GDP-D-mannuronate
C00984  alpha-D-Galactose
C01019  L-Fucose
C01050  UDP-N-acetylmuramate
C01132  N-Acetyl-D-galactosamine
C01170  UDP-N-acetyl-D-mannosamine
C01623  UDP-apiose
C01674  Chitobiose
C02262  D-Galactosamine
C02280  GDP-L-galactose
C02352  1,4-beta-D-Xylan
C02474  Arabinan
C02713  N-Acetylmuramate
C02985  L-Fucose 1-phosphate
C03733  UDP-alpha-D-galactofuranose
C03737  alpha-D-Xylose 1-phosphate
C03906  beta-L-Arabinose 1-phosphate
C04037  1-Phospho-alpha-D-galacturonate
C04257  N-Acetyl-D-mannosamine 6-phosphate
C04501  N-Acetyl-alpha-D-glucosamine 1-phosphate
C04631  UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine
C05385  D-Glucuronate 1-phosphate
C06023  D-Glucosaminide
C06156  alpha-D-Glucosamine 1-phosphate
C06376  N-Acetyl-D-galactosamine 6-phosphate
C06377  D-Galactosamine 6-phosphate
C11521  UDP-6-sulfoquinovose
C15925  GDP-L-gulose
C16183  alpha-D-Arabinopyranose 1-phosphate
C16698  N-Acetylmuramic acid 6-phosphate
C17269  GDP-D-arabinopyranose
C18060  N-Acetyl-alpha-D-galactosamine 1-phosphate
C18094  UDP-L-arabinofuranose
C19769  1,6-Anhydro-N-acetyl-beta-muramate
C21027  N-Acetylmuramic acid alpha-1-phosphate
C22029  alpha-D-Galactosamine 1-phosphate
Reference
PMID:2793832
  Authors
Wyk P, Reeves P
  Title
Identification and sequence of the gene for abequose synthase, which confers antigenic specificity on group B salmonellae: homology with galactose epimerase.
  Journal
J Bacteriol 171:5687-93 (1989)
DOI:10.1128/JB.171.10.5687-5693.1989
Reference
PMID:8071227
  Authors
Thorson JS, Lo SF, Ploux O, He X, Liu HW
  Title
Studies of the biosynthesis of 3,6-dideoxyhexoses: molecular cloning and characterization of the asc (ascarylose) region from Yersinia pseudotuberculosis serogroup VA.
  Journal
J Bacteriol 176:5483-93 (1994)
DOI:10.1128/JB.176.17.5483-5493.1994
Reference
PMID:8444803
  Authors
Kessler AC, Haase A, Reeves PR
  Title
Molecular analysis of the 3,6-dideoxyhexose pathway genes of Yersinia pseudotuberculosis serogroup IIA.
  Journal
J Bacteriol 175:1412-22 (1993)
DOI:10.1128/JB.175.5.1412-1422.1993
Reference
PMID:9811644
  Authors
Danese PN, Oliver GR, Barr K, Bowman GD, Rick PD, Silhavy TJ
  Title
Accumulation of the enterobacterial common antigen lipid II biosynthetic intermediate stimulates degP transcription in Escherichia coli.
  Journal
J Bacteriol 180:5875-84 (1998)
DOI:10.1128/JB.180.22.5875-5884.1998
Reference
  Authors
Skurnik M, Peippo A, Ervela E
  Title
Characterization of the O-antigen gene clusters of Yersinia pseudotuberculosis and the cryptic O-antigen gene cluster of Yersinia pestis shows that the plague bacillus is most closely related to and has evolved from Y. pseudotuberculosis serotype O:1b.
  Journal
Mol Microbiol 37:316-30 (2000)
DOI:10.1046/j.1365-2958.2000.01993.x
Reference
  Authors
Stover CK, Pham XQ, Erwin AL, Mizoguchi SD, Warrener P, Hickey MJ, Brinkman FS, Hufnagle WO, Kowalik DJ, Lagrou M, Garber RL, Goltry L, Tolentino E, Westbrock-Wadman S, Yuan Y, Brody LL, Coulter SN, Folger KR, Kas A, Larbig K, Lim R, Smith K, Spencer D, Wong GK, Wu Z, Paulsen IT, Reizer J, Saier MH, Hancock RE, Lory S, Olson MV
  Title
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.
  Journal
Nature 406:959-64 (2000)
DOI:10.1038/35023079
Reference
  Authors
Ringenberg M, Lichtensteiger C, Vimr E
  Title
Redirection of sialic acid metabolism in genetically engineered Escherichia coli.
  Journal
Glycobiology 11:533-9 (2001)
DOI:10.1093/glycob/11.7.533
Reference
  Authors
McCoy AJ, Sandlin RC, Maurelli AT
  Title
In vitro and in vivo functional activity of Chlamydia MurA, a UDP-N-acetylglucosamine enolpyruvyl transferase involved in peptidoglycan synthesis and fosfomycin resistance.
  Journal
J Bacteriol 185:1218-28 (2003)
DOI:10.1128/JB.185.4.1218-1228.2003
Reference
  Authors
JACOBSON B, DAVIDSON EA
  Title
Biosynthesis of uronic acids by skin enzymes. I. Uridine diphosphate-D-glucuronic acid-5-epimerase.
  Journal
J Biol Chem 237:638-42 (1962)
Reference
  Authors
Seifert GJ
  Title
Nucleotide sugar interconversions and cell wall biosynthesis: how to bring the inside to the outside.
  Journal
Curr Opin Plant Biol 7:277-84 (2004)
DOI:10.1016/j.pbi.2004.03.004
Reference
  Authors
Uehara T, Park JT
  Title
The N-acetyl-D-glucosamine kinase of Escherichia coli and its role in murein recycling.
  Journal
J Bacteriol 186:7273-9 (2004)
DOI:10.1128/JB.186.21.7273-7279.2004
Reference
  Authors
Breazeale SD, Ribeiro AA, McClerren AL, Raetz CR.
  Title
A formyltransferase required for polymyxin resistance in Escherichia coli and the modification of lipid A with 4-Amino-4-deoxy-L-arabinose. Identification and function oF UDP-4-deoxy-4-formamido-L-arabinose.
  Journal
J Biol Chem 280:14154-67 (2005)
DOI:10.1074/jbc.M414265200
Reference
  Authors
Williams GJ, Breazeale SD, Raetz CR, Naismith JH.
  Title
Structure and function of both domains of ArnA, a dual function decarboxylase and a formyltransferase, involved in 4-amino-4-deoxy-L-arabinose biosynthesis.
  Journal
J Biol Chem 280:23000-8 (2005)
DOI:10.1074/jbc.M501534200
Reference
  Authors
Maliekal P, Vertommen D, Delpierre G, Van Schaftingen E
  Title
Identification of the sequence encoding N-acetylneuraminate-9-phosphate phosphatase.
  Journal
Glycobiology 16:165-72 (2006)
DOI:10.1093/glycob/cwj050
Reference
  Authors
Campbell CT, Yarema KJ
  Title
Large-scale approaches for glycobiology.
  Journal
Genome Biol 6:236 (2005)
DOI:10.1186/gb-2005-6-11-236
Reference
  Authors
Uehara T, Suefuji K, Jaeger T, Mayer C, Park JT
  Title
MurQ Etherase is required by Escherichia coli in order to metabolize anhydro-N-acetylmuramic acid obtained either from the environment or from its own cell wall.
  Journal
J Bacteriol 188:1660-2 (2006)
DOI:10.1128/JB.188.4.1660-1662.2006
Reference
  Authors
Lanot A, Hodge D, Jackson RG, George GL, Elias L, Lim EK, Vaistij FE, Bowles DJ
  Title
The glucosyltransferase UGT72E2 is responsible for monolignol 4-O-glucoside production in Arabidopsis thaliana.
  Journal
Plant J 48:286-95 (2006)
DOI:10.1111/j.1365-313X.2006.02872.x
Reference
  Authors
Muller R, Morant M, Jarmer H, Nilsson L, Nielsen TH
  Title
Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism.
  Journal
Plant Physiol 143:156-71 (2007)
DOI:10.1104/pp.106.090167
Reference
  Authors
Oka T, Nemoto T, Jigami Y
  Title
Functional analysis of Arabidopsis thaliana RHM2/MUM4, a multidomain protein involved in UDP-D-glucose to UDP-L-rhamnose conversion.
  Journal
J Biol Chem 282:5389-403 (2007)
DOI:10.1074/jbc.M610196200
Reference
  Authors
Greenberg DE, Porcella SF, Zelazny AM, Virtaneva K, Sturdevant DE, Kupko JJ 3rd, Barbian KD, Babar A, Dorward DW, Holland SM.
  Title
Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis.
  Journal
J Bacteriol 189:8727-36 (2007)
DOI:10.1128/JB.00793-07
Reference
  Authors
Kotake T, Hojo S, Tajima N, Matsuoka K, Koyama T, Tsumuraya Y
  Title
A bifunctional enzyme with L-fucokinase and GDP-L-fucose pyrophosphorylase activities salvages free L-fucose in Arabidopsis.
  Journal
J Biol Chem 283:8125-35 (2008)
DOI:10.1074/jbc.M710078200
Reference
  Authors
Vorholter FJ, Schneiker S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Ruckert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Puhler A.
  Title
The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
  Journal
J Biotechnol 134:33-45 (2008)
DOI:10.1016/j.jbiotec.2007.12.013
Reference
  Authors
Albermann C, Piepersberg W
  Title
Expression and identification of the RfbE protein from Vibrio cholerae O1 and its use for the enzymatic synthesis of GDP-D-perosamine.
  Journal
Glycobiology 11:655-61 (2001)
DOI:10.1093/glycob/11.8.655
Related
pathway
csb00010  Glycolysis / Gluconeogenesis
csb00040  Pentose and glucuronate interconversions
csb00051  Fructose and mannose metabolism
csb00052  Galactose metabolism
csb00053  Ascorbate and aldarate metabolism
csb00500  Starch and sucrose metabolism
csb00521  Streptomycin biosynthesis
csb00523  Polyketide sugar unit biosynthesis
csb00525  Acarbose and validamycin biosynthesis
csb00540  Lipopolysaccharide biosynthesis
csb00541  Biosynthesis of various nucleotide sugars
csb00550  Peptidoglycan biosynthesis
KO pathway
ko00520   

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