KEGG   PATHWAY: dhi00020
Entry
dhi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Dermatobacter hominis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dhi00020  Citrate cycle (TCA cycle)
dhi00020

Module
dhi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dhi00020]
dhi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dhi00020]
dhi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dhi00020]
dhi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dhi00020]
dhi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dhi00020]
Other DBs
GO: 0006099
Organism
Dermatobacter hominis [GN:dhi]
Gene
LH044_04335  citrate synthase [KO:K01647] [EC:2.3.3.1]
LH044_18420  citrate synthase [KO:K01647] [EC:2.3.3.1]
LH044_18425  hypothetical protein [KO:K01647] [EC:2.3.3.1]
LH044_04310  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LH044_12465  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LH044_10445  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LH044_05150  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
LH044_19690  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LH044_15820  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LH044_15825  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LH044_10645  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LH044_10650  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LH044_10270  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LH044_10275  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LH044_10265  succinate dehydrogenase cytochrome b subunit [KO:K00241]
LH044_15210  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LH044_13390  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LH044_10375  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LH044_05060  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
LH044_19565  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LH044_19695  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dhi00010  Glycolysis / Gluconeogenesis
dhi00053  Ascorbate and aldarate metabolism
dhi00061  Fatty acid biosynthesis
dhi00071  Fatty acid degradation
dhi00190  Oxidative phosphorylation
dhi00220  Arginine biosynthesis
dhi00250  Alanine, aspartate and glutamate metabolism
dhi00280  Valine, leucine and isoleucine degradation
dhi00350  Tyrosine metabolism
dhi00470  D-Amino acid metabolism
dhi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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