KEGG   PATHWAY: dme04142
Entry
dme04142                    Pathway                                
Name
Lysosome - Drosophila melanogaster (fruit fly)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
Pathway map
dme04142  Lysosome
dme04142

Other DBs
GO: 0005764
Organism
Drosophila melanogaster (fruit fly) [GN:dme]
Gene
Dmel_CG10104  CG10104; uncharacterized protein [KO:K01379] [EC:3.4.23.5]
Dmel_CG10106  Tsp42Ee; tetraspanin 42Ee, isoform B [KO:K06497]
Dmel_CG10474  CG10474; uncharacterized protein [KO:K01444] [EC:3.5.1.26]
Dmel_CG10986  g; garnet, isoform B [KO:K12396]
Dmel_CG10992  CtsB; cathepsin B, isoform C [KO:K01363] [EC:3.4.22.1]
Dmel_CG11314  Npc2g; Niemann-Pick type C-2g, isoform B [KO:K13443]
Dmel_CG11315  Npc2h; Niemann-Pick type C-2h, isoform C [KO:K13443]
Dmel_CG11406  CG11406; uncharacterized protein, isoform B [KO:K01052] [EC:3.1.1.13]
Dmel_CG11427  rb; ruby, isoform D [KO:K12397]
Dmel_CG11459  CtsL3; cathepsin L3, isoform B [KO:K01365] [EC:3.4.22.15]
Dmel_CG12014  Ids; iduronate 2-sulfatase [KO:K01136] [EC:3.1.6.13]
Dmel_CG12070  Sap-r; Saposin-related, isoform A [KO:K12382]
Dmel_CG12092  Npc1b; Niemann-Pick type C-1b [KO:K12385]
Dmel_CG12108  Ppt1; Palmitoyl-protein thioesterase 1, isoform B [KO:K01074] [EC:3.1.2.22]
Dmel_CG12163  CtsF; cathepsin F, isoform A [KO:K01373] [EC:3.4.22.41]
Dmel_CG12532  AP-1-2beta; adaptor protein complex 1/2, beta subunit [KO:K12392]
Dmel_CG12582  beta-Man; beta-Mannosidase, isoform D [KO:K01192] [EC:3.2.1.25]
Dmel_CG12602  Vha100-5; vacuolar H[+] ATPase 100kD subunit 5, isoform B [KO:K02154]
Dmel_CG12846  Tsp42Ed; tetraspanin 42Ed, isoform B [KO:K06497]
Dmel_CG13095  Bace; beta-site APP-cleaving enzyme, isoform B [KO:K01379] [EC:3.4.23.5]
Dmel_CG1318  Hexo1; hexosaminidase 1, isoform A [KO:K12373] [EC:3.2.1.52]
Dmel_CG13397  Naglu; N-acetyl-alpha-glucosaminidase, isoform B [KO:K01205] [EC:3.2.1.50]
Dmel_CG13510  CG13510; uncharacterized protein, isoform B [KO:K19363]
Dmel_CG13511  CG13511; uncharacterized protein, isoform B [KO:K19363]
Dmel_CG13516  CG13516; uncharacterized protein, isoform A [KO:K19363]
Dmel_CG14291  Sgsh; N-sulfoglucosamine sulfohydrolase [KO:K01565] [EC:3.10.1.1]
Dmel_CG14767  CG14767; uncharacterized protein, isoform A [KO:K12387]
Dmel_CG15117  CG15117; uncharacterized protein, isoform C [KO:K01195] [EC:3.2.1.31]
Dmel_CG1548  cathD; cathepsin D, isoform B [KO:K01379] [EC:3.4.23.5]
Dmel_CG1709  Vha100-1; vacuolar H[+] ATPase 100kD subunit 1, isoform I [KO:K02154]
Dmel_CG17119  Ctns; cystinosin, isoform A [KO:K12386]
Dmel_CG17134  CG17134; uncharacterized protein [KO:K01379] [EC:3.4.23.5]
Dmel_CG17283  CG17283; uncharacterized protein [KO:K01379] [EC:3.4.23.5]
Dmel_CG17332  VhaSFD; vacuolar H[+]-ATPase SFD subunit, isoform E [KO:K02144]
Dmel_CG17766  Rbcn-3B; Rabconnectin-3B, isoform B [KO:K24738]
Dmel_CG1787  Hexo2; hexosaminidase 2 [KO:K12373] [EC:3.2.1.52]
Dmel_CG1827  CG1827; uncharacterized protein [KO:K01444] [EC:3.5.1.26]
Dmel_CG18278  CG18278; uncharacterized protein [KO:K01137] [EC:3.1.6.14]
Dmel_CG18301  CG18301; uncharacterized protein [KO:K01052] [EC:3.1.1.13]
Dmel_CG18617  Vha100-2; vacuolar H[+] ATPase 100kD subunit 2, isoform B [KO:K02154]
Dmel_CG18816  Tsp42Eb; tetraspanin 42Eb [KO:K06497]
Dmel_CG18817  Tsp42Ea; tetraspanin 42Ea, isoform A [KO:K06497]
Dmel_CG18858  CG18858; uncharacterized protein, isoform B [KO:K06129] [EC:3.1.1.5]
Dmel_CG2135  betaGlu; beta glucuronidase [KO:K01195] [EC:3.2.1.31]
Dmel_CG2934  VhaAC39-1; vacuolar H[+] ATPase AC39 subunit 1 [KO:K02146]
Dmel_CG3002  Gga; Golgi-localized, gamma-adaptin ear containing, ARF binding protein [KO:K12404]
Dmel_CG30059  CG30059; uncharacterized protein [KO:K01137] [EC:3.1.6.14]
Dmel_CG30160  CG30160; uncharacterized protein [KO:K06497]
Dmel_CG30269  CG30269; uncharacterized protein, isoform B [KO:K19363]
Dmel_CG30273  CG30273; uncharacterized protein [KO:K19363]
Dmel_CG3029  or; orange [KO:K12399]
Dmel_CG30329  Vha100-3; vacuolar H[+] ATPase 100kD subunit 3 [KO:K02154]
Dmel_CG3035  cm; carmine, isoform B [KO:K12398]
Dmel_CG31072  Lerp; lysosomal enzyme receptor protein, isoform E [KO:K06564]
Dmel_CG31148  Gba1a; glucocerebrosidase 1a [KO:K01201] [EC:3.2.1.45]
Dmel_CG3132  Ect3; Ectoderm-expressed 3 [KO:K12309] [EC:3.2.1.23]
Dmel_CG31410  Npc2e; Niemann-Pick type C-2e [KO:K13443]
Dmel_CG31414  Gba1b; glucocerebrosidase 1b, isoform B [KO:K01201] [EC:3.2.1.45]
Dmel_CG3153  Npc2b; Niemann-Pick type C-2b, isoform B [KO:K13443]
Dmel_CG3161  Vha16-1; vacuolar H[+] ATPase 16kD subunit 1, isoform A [KO:K02155]
Dmel_CG31661  CG31661; uncharacterized protein [KO:K01379] [EC:3.4.23.5]
Dmel_CG31683  CG31683; uncharacterized protein, isoform B [KO:K06129] [EC:3.1.1.5]
Dmel_CG31926  CG31926; uncharacterized protein, isoform B [KO:K01379] [EC:3.4.23.5]
Dmel_CG31928  CG31928; uncharacterized protein, isoform B [KO:K01379] [EC:3.4.23.5]
Dmel_CG32089  Vha16-2; vacuolar H[+] ATPase 16kD subunit 2 [KO:K02155]
Dmel_CG32090  Vha16-3; vacuolar H[+] ATPase 16kD subunit 3, isoform B [KO:K02155]
Dmel_CG32464  mtd; mustard, isoform N [KO:K25442]
Dmel_CG3305  Lamp1; Lamp1 [KO:K06528]
Dmel_CG33128  CG33128; uncharacterized protein [KO:K01379] [EC:3.4.23.5]
Dmel_CG3376  CG3376; uncharacterized protein, isoform C [KO:K12350] [EC:3.1.4.12]
Dmel_CG3585  Rbcn-3A; Rabconnectin-3A [KO:K24155]
Dmel_CG3671  Mvl; malvolio, isoform D [KO:K21398]
Dmel_CG3934  Npc2c; Niemann-Pick type C-2c [KO:K13443]
Dmel_CG4250  CG4250; uncharacterized protein, isoform B [KO:K19363]
Dmel_CG42565  CG42565; uncharacterized protein, isoform B [KO:K19363]
Dmel_CG42566  CG42566; uncharacterized protein, isoform A [KO:K19363]
Dmel_CG4330  MFS10; major facilitator superfamily transporter 10, isoform C [KO:K12301]
Dmel_CG4372  CG4372; uncharacterized protein [KO:K01444] [EC:3.5.1.26]
Dmel_CG4624  VhaAC39-2; vacuolar H[+] ATPase AC39 subunit 2 [KO:K02146]
Dmel_CG4847  CtsK2; cathepsin K2, isoform A [KO:K01371] [EC:3.4.22.38]
Dmel_CG4851  Ppt2; Palmitoyl-protein thioesterase 2 [KO:K01074] [EC:3.1.2.22]
Dmel_CG5149  CG5149; uncharacterized protein [KO:K27947]
Dmel_CG5322  LManI; lysosomal alpha-mannosidase I, isoform B [KO:K12311] [EC:3.2.1.24]
Dmel_CG5582  Cln3; Cln3, isoform B [KO:K12389]
Dmel_CG5722  Npc1a; Niemann-Pick type C-1a, isoform B [KO:K12385]
Dmel_CG5731  CG5731; uncharacterized protein [KO:K01204] [EC:3.2.1.49]
Dmel_CG5860  CG5860; uncharacterized protein [KO:K01379] [EC:3.4.23.5]
Dmel_CG5863  CG5863; uncharacterized protein [KO:K01379] [EC:3.4.23.5]
Dmel_CG5864  AP-1sigma; adaptor protein complex 1, sigma subunit, isoform B [KO:K12394]
Dmel_CG6113  Lip4; lipase 4, isoform B [KO:K01052] [EC:3.1.1.13]
Dmel_CG6128  Fuca; alpha-L-fucosidase, isoform C [KO:K01206] [EC:3.2.1.51]
Dmel_CG6201  Idua; alpha-L-iduronidase [KO:K01217] [EC:3.2.1.76]
Dmel_CG6206  LManII; lysosomal alpha-mannosidase II, isoform A [KO:K12311] [EC:3.2.1.24]
Dmel_CG6508  CG6508; uncharacterized protein [KO:K01379] [EC:3.4.23.5]
Dmel_CG6656  CG6656; uncharacterized protein [KO:K14410] [EC:3.1.3.2]
Dmel_CG6692  CtsL1; cathepsin L1, isoform C [KO:K01365] [EC:3.4.22.15]
Dmel_CG6737  Vha16-5; vacuolar H[+] ATPase 16kD subunit 5 [KO:K02155]
Dmel_CG6903  Hgsnat; Heparan-alpha-glucosaminide N-acetyltransferase, isoform B [KO:K10532] [EC:2.3.1.78]
Dmel_CG7007  VhaPPA1-1; vacuolar H[+] ATPase PPA1 subunit 1, isoform B [KO:K03661]
Dmel_CG7026  VhaPPA1-2; vacuolar H[+] ATPase PPA1 subunit 2 [KO:K03661]
Dmel_CG7049  CG7049; uncharacterized protein [KO:K13444] [EC:1.8.3.7]
Dmel_CG7291  Npc2a; Niemann-Pick type C-2a [KO:K13443]
Dmel_CG7402  CG7402; uncharacterized protein [KO:K01135] [EC:3.1.6.12]
Dmel_CG7678  Vha100-4; vacuolar H[+] ATPase 100kD subunit 4 [KO:K02154]
Dmel_CG7780  DNaseII; deoxyribonuclease II [KO:K01158] [EC:3.1.22.1]
Dmel_CG7899  Acph-1; acid phosphatase 1, isoform A [KO:K14410] [EC:3.1.3.2]
Dmel_CG7997  CG7997; uncharacterized protein, isoform A [KO:K01204] [EC:3.2.1.49]
Dmel_CG8027  Gnptab; N-acetylglucosamine-1-phosphate transferase subunits alpha and beta [KO:K08239] [EC:2.7.8.17]
Dmel_CG8029  VhaAC45; vacuolar H[+] ATPase AC45 accessory subunit, isoform B [KO:K03662]
Dmel_CG8098  Picot; picot, isoform B [KO:K12301]
Dmel_CG8596  Cln7; Cln7, isoform B [KO:K12307]
Dmel_CG8646  CG8646; uncharacterized protein [KO:K01135] [EC:3.1.6.12]
Dmel_CG8666  Tsp39D; tetraspanin 39D [KO:K06497]
Dmel_CG8823  Lip3; lipase 3 [KO:K01052] [EC:3.1.1.13]
Dmel_CG9012  Chc; clathrin heavy chain, isoform E [KO:K04646]
Dmel_CG9013  Vha16-4; vacuolar H[+] ATPase 16kD subunit 4 [KO:K02155]
Dmel_CG9092  Gal; beta galactosidase, isoform B [KO:K12309] [EC:3.2.1.23]
Dmel_CG9113  AP-1gamma; adaptor protein complex 1, gamma subunit, isoform F [KO:K12391]
Dmel_CG9388  AP-1mu; adaptor protein complex 1, mu subunit [KO:K12393]
Dmel_CG9463  LManIII; lysosomal alpha-mannosidase III, isoform B [KO:K12311] [EC:3.2.1.24]
Dmel_CG9465  LManIV; lysosomal alpha-mannosidase IV [KO:K12311] [EC:3.2.1.24]
Dmel_CG9466  LManV; lysosomal alpha-mannosidase V, isoform B [KO:K12311] [EC:3.2.1.24]
Dmel_CG9468  LManVI; lysosomal alpha-mannosidase VI [KO:K12311] [EC:3.2.1.24]
Dmel_CG9494  Tsp29Fa; tetraspanin 29Fa, isoform B [KO:K06497]
Compound
C00002  ATP
C00008  ADP
C00159  D-Mannose
C00275  D-Mannose 6-phosphate
Reference
  Authors
Eskelinen EL, Tanaka Y, Saftig P
  Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
  Journal
Trends Cell Biol 13:137-45 (2003)
DOI:10.1016/S0962-8924(03)00005-9
Reference
PMID:1883197
  Authors
Neufeld EF
  Title
Lysosomal storage diseases.
  Journal
Annu Rev Biochem 60:257-80 (1991)
DOI:10.1146/annurev.bi.60.070191.001353
Reference
PMID:2943218
  Authors
von Figura K, Hasilik A
  Title
Lysosomal enzymes and their receptors.
  Journal
Annu Rev Biochem 55:167-93 (1986)
DOI:10.1146/annurev.bi.55.070186.001123
Reference
  Authors
Janvier K, Bonifacino JS
  Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
  Journal
Mol Biol Cell 16:4231-42 (2005)
DOI:10.1091/mbc.E05-03-0213
Reference
  Authors
Vergarajauregui S, Puertollano R
  Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
  Journal
Autophagy 4:832-4 (2008)
DOI:10.4161/auto.6567
Reference
  Authors
Jaskolka MC, Winkley SR, Kane PM
  Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
  Journal
Front Cell Dev Biol 9:698190 (2021)
DOI:10.3389/fcell.2021.698190
Reference
  Authors
Majdoul S, Compton AA
  Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
  Journal
Nat Rev Immunol 10.1038/s41577-021-00626-8 (2021)
DOI:10.1038/s41577-021-00626-8
Related
pathway
dme00511  Other glycan degradation
dme00531  Glycosaminoglycan degradation
dme04130  SNARE interactions in vesicular transport
dme04140  Autophagy - animal
dme04144  Endocytosis
KO pathway
ko04142   

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