KEGG   PATHWAY: dta00020
Entry
dta00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Dyella terrae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dta00020  Citrate cycle (TCA cycle)
dta00020

Module
dta_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dta00020]
dta_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dta00020]
dta_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dta00020]
dta_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dta00020]
dta_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dta00020]
Other DBs
GO: 0006099
Organism
Dyella terrae [GN:dta]
Gene
DYST_01336  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
DYST_03785  citrate synthase [KO:K01647] [EC:2.3.3.1]
DYST_00261  aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DYST_00264  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DYST_03364  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DYST_04603  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
DYST_00024  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DYST_00023  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DYST_03635  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DYST_00022  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DYST_03987  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DYST_03986  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DYST_01754  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
DYST_04861  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DYST_04862  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DYST_04859  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DYST_04860  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DYST_04091  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DYST_00039  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DYST_01340  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DYST_02091  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
DYST_03608  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
DYST_03634  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dta00010  Glycolysis / Gluconeogenesis
dta00053  Ascorbate and aldarate metabolism
dta00061  Fatty acid biosynthesis
dta00071  Fatty acid degradation
dta00190  Oxidative phosphorylation
dta00220  Arginine biosynthesis
dta00250  Alanine, aspartate and glutamate metabolism
dta00280  Valine, leucine and isoleucine degradation
dta00350  Tyrosine metabolism
dta00470  D-Amino acid metabolism
dta00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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