KEGG   PATHWAY: eame00020
Entry
eame00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Ewingella americana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eame00020  Citrate cycle (TCA cycle)
eame00020

Module
eame_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eame00020]
eame_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eame00020]
eame_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eame00020]
eame_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eame00020]
eame_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eame00020]
Other DBs
GO: 0006099
Organism
Ewingella americana [GN:eame]
Gene
GXP68_14935  citrate synthase [KO:K01647] [EC:2.3.3.1]
GXP68_22320  citrate synthase [KO:K01647] [EC:2.3.3.1]
GXP68_08970  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GXP68_17310  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GXP68_07835  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GXP68_14910  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GXP68_14905  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GXP68_17315  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GXP68_14895  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GXP68_14900  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GXP68_14920  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GXP68_14915  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GXP68_14930  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
GXP68_14925  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
GXP68_19540  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
GXP68_19545  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
GXP68_19550  frdC; fumarate reductase subunit FrdC [KO:K00246]
GXP68_19555  frdD; fumarate reductase subunit FrdD [KO:K00247]
GXP68_03145  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GXP68_10780  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GXP68_19285  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GXP68_00555  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
GXP68_01025  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GXP68_17325  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GXP68_17320  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
GXP68_10210  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eame00010  Glycolysis / Gluconeogenesis
eame00053  Ascorbate and aldarate metabolism
eame00061  Fatty acid biosynthesis
eame00071  Fatty acid degradation
eame00190  Oxidative phosphorylation
eame00220  Arginine biosynthesis
eame00250  Alanine, aspartate and glutamate metabolism
eame00280  Valine, leucine and isoleucine degradation
eame00350  Tyrosine metabolism
eame00470  D-Amino acid metabolism
eame00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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