KEGG   PATHWAY: eas00020
Entry
eas00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter soli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eas00020  Citrate cycle (TCA cycle)
eas00020

Module
eas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eas00020]
eas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eas00020]
eas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eas00020]
eas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eas00020]
eas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eas00020]
Other DBs
GO: 0006099
Organism
Enterobacter soli [GN:eas]
Gene
Entas_1199  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Entas_2363  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Entas_0720  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Entas_1670  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Entas_1204  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Entas_1205  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Entas_0716  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Entas_1207  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Entas_1206  Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
Entas_1202  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Entas_1203  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Entas_1200  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Entas_1201  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Entas_0378  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Entas_0377  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
Entas_0376  Fumarate reductase subunit C [KO:K00246]
Entas_0375  Fumarate reductase subunit D [KO:K00247]
Entas_1854  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Entas_2766  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Entas_1855  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Entas_1793  hypothetical protein [KO:K01675] [EC:4.2.1.2]
Entas_3923  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Entas_2958  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Entas_4098  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Entas_0714  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Entas_0715  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Entas_2316  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eas00010  Glycolysis / Gluconeogenesis
eas00053  Ascorbate and aldarate metabolism
eas00061  Fatty acid biosynthesis
eas00071  Fatty acid degradation
eas00190  Oxidative phosphorylation
eas00220  Arginine biosynthesis
eas00250  Alanine, aspartate and glutamate metabolism
eas00280  Valine, leucine and isoleucine degradation
eas00350  Tyrosine metabolism
eas00470  D-Amino acid metabolism
eas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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