KEGG   PATHWAY: eay00020
Entry
eay00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Erwinia amylovora ATCC 49946
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eay00020  Citrate cycle (TCA cycle)
eay00020

Module
eay_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eay00020]
eay_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eay00020]
eay_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eay00020]
eay_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eay00020]
eay_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eay00020]
Other DBs
GO: 0006099
Organism
Erwinia amylovora ATCC 49946 [GN:eay]
Gene
EAM_1167  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
EAM_1866  acnA; aconitate hydratase 1 (citrate hydro-lyase 1) [KO:K01681] [EC:4.2.1.3]
EAM_0772  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EAM_1520  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EAM_1172  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EAM_1173  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2 oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
EAM_0749  lpdA; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) [KO:K00382] [EC:1.8.1.4]
EAM_1175  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
EAM_1174  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
EAM_1170  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EAM_1171  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
EAM_1168  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
EAM_1169  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
EAM_1537  fumA; fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
EAM_1705  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
EAM_3121  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EAM_1744  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EAM_0109  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EAM_3251  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EAM_0747  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
EAM_0748  aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvat dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eay00010  Glycolysis / Gluconeogenesis
eay00053  Ascorbate and aldarate metabolism
eay00061  Fatty acid biosynthesis
eay00071  Fatty acid degradation
eay00190  Oxidative phosphorylation
eay00220  Arginine biosynthesis
eay00250  Alanine, aspartate and glutamate metabolism
eay00280  Valine, leucine and isoleucine degradation
eay00350  Tyrosine metabolism
eay00470  D-Amino acid metabolism
eay00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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