KEGG   PATHWAY: ebd00260
Entry
ebd00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Escherichia coli BL21-Gold(DE3)pLysS AG
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
ebd00260  Glycine, serine and threonine metabolism
ebd00260

Module
ebd_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:ebd00260]
ebd_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:ebd00260]
ebd_M00555  Betaine biosynthesis, choline => betaine [PATH:ebd00260]
ebd_M00621  Glycine cleavage system [PATH:ebd00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Escherichia coli BL21-Gold(DE3)pLysS AG [GN:ebd]
Gene
ECBD_4013  aspartate kinase [KO:K00928] [EC:2.7.2.4]
ECBD_3616  aspartate kinase [KO:K12524] [EC:2.7.2.4 1.1.1.3]
ECBD_4083  aspartate kinase [KO:K12525] [EC:2.7.2.4 1.1.1.3]
ECBD_0309  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
ECBD_3615  homoserine kinase [KO:K00872] [EC:2.7.1.39]
ECBD_3614  threonine synthase [KO:K01733] [EC:4.2.3.1]
ECBD_2724  Threonine aldolase [KO:K01620] [EC:4.1.2.48]
ECBD_1133  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
ECBD_2566  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K12972] [EC:1.1.1.79 1.1.1.81]
ECBD_0184  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
ECBD_0618  glycerate kinase [KO:K00865] [EC:2.7.1.165]
ECBD_3144  glycerate kinase [KO:K00865] [EC:2.7.1.165]
ECBD_2912  phosphoglycerate mutase 1 family [KO:K01834] [EC:5.4.2.11]
ECBD_3625  Phosphoglycerate mutase [KO:K15634] [EC:5.4.2.11]
ECBD_0113  phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [KO:K15633] [EC:5.4.2.12]
ECBD_0825  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00058] [EC:1.1.1.95 1.1.1.399]
ECBD_2688  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
ECBD_3632  phosphoserine phosphatase SerB [KO:K01079] [EC:3.1.3.3]
ECBD_2100  short-chain dehydrogenase/reductase SDR [KO:K16066] [EC:1.1.1.381 1.1.1.-]
ECBD_0108  2-amino-3-ketobutyrate coenzyme A ligase [KO:K00639] [EC:2.3.1.29]
ECBD_0109  L-threonine 3-dehydrogenase [KO:K00060] [EC:1.1.1.103]
ECBD_0834  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
ECBD_0832  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
ECBD_3503  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECBD_0833  glycine cleavage system H protein [KO:K02437]
ECBD_1095  phospholipase D/Transphosphatidylase [KO:K00998] [EC:2.7.8.8]
ECBD_3347  choline dehydrogenase [KO:K00108] [EC:1.1.99.1]
ECBD_3346  betaine aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
ECBD_0931  L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]
ECBD_0628  L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]
ECBD_1828  L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]
ECBD_0623  Pyridoxal-5'-phosphate-dependent protein beta subunit [KO:K01754] [EC:4.3.1.19]
ECBD_4267  threonine dehydratase, biosynthetic [KO:K01754] [EC:4.3.1.19]
ECBD_1306  D-serine ammonia-lyase [KO:K01753] [EC:4.3.1.18]
ECBD_0884  aspartate racemase [KO:K25316] [EC:5.1.1.10]
ECBD_2362  tryptophan synthase, alpha subunit [KO:K01695] [EC:4.2.1.20]
ECBD_2361  tryptophan synthase, beta subunit [KO:K01696] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
ebd00010  Glycolysis / Gluconeogenesis
ebd00020  Citrate cycle (TCA cycle)
ebd00230  Purine metabolism
ebd00250  Alanine, aspartate and glutamate metabolism
ebd00270  Cysteine and methionine metabolism
ebd00290  Valine, leucine and isoleucine biosynthesis
ebd00300  Lysine biosynthesis
ebd00330  Arginine and proline metabolism
ebd00460  Cyanoamino acid metabolism
ebd00470  D-Amino acid metabolism
ebd00564  Glycerophospholipid metabolism
ebd00600  Sphingolipid metabolism
ebd00620  Pyruvate metabolism
ebd00630  Glyoxylate and dicarboxylate metabolism
ebd00640  Propanoate metabolism
ebd00680  Methane metabolism
ebd00860  Porphyrin metabolism
ebd00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

DBGET integrated database retrieval system