KEGG   PATHWAY: ebs00020
Entry
ebs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ectothiorhodospira sp. BSL-9
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ebs00020  Citrate cycle (TCA cycle)
ebs00020

Module
ebs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ebs00020]
ebs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ebs00020]
ebs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ebs00020]
ebs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ebs00020]
ebs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ebs00020]
Other DBs
GO: 0006099
Organism
Ectothiorhodospira sp. BSL-9 [GN:ebs]
Gene
ECTOBSL9_3080  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ECTOBSL9_2702  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ECTOBSL9_2701  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECTOBSL9_2697  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ECTOBSL9_1123  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
ECTOBSL9_1122  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ECTOBSL9_0782  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECTOBSL9_1801  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
ECTOBSL9_1121  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECTOBSL9_2155  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECTOBSL9_0385  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ECTOBSL9_0386  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ECTOBSL9_3173  fumarate reductase [KO:K00239] [EC:1.3.5.1]
ECTOBSL9_3174  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ECTOBSL9_3171  succinate dehydrogenase [KO:K00241]
ECTOBSL9_3172  succinate dehydrogenase [KO:K00242]
ECTOBSL9_2585  fumarate reductase [KO:K00244] [EC:1.3.5.1]
ECTOBSL9_2584  fumarate reductase [KO:K00245] [EC:1.3.5.1]
ECTOBSL9_2583  fumarate reductase [KO:K00246]
ECTOBSL9_2582  fumarate reductase [KO:K00247]
ECTOBSL9_2127  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ECTOBSL9_2706  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
ECTOBSL9_0512  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ECTOBSL9_2867  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
ECTOBSL9_2868  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
ECTOBSL9_3213  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECTOBSL9_2939  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
ECTOBSL9_2153  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ECTOBSL9_2154  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
ECTOBSL9_1385  pyruvate ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ebs00010  Glycolysis / Gluconeogenesis
ebs00053  Ascorbate and aldarate metabolism
ebs00061  Fatty acid biosynthesis
ebs00071  Fatty acid degradation
ebs00190  Oxidative phosphorylation
ebs00220  Arginine biosynthesis
ebs00250  Alanine, aspartate and glutamate metabolism
ebs00280  Valine, leucine and isoleucine degradation
ebs00350  Tyrosine metabolism
ebs00470  D-Amino acid metabolism
ebs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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