KEGG   PATHWAY: ebt00020
Entry
ebt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shimwellia blattae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ebt00020  Citrate cycle (TCA cycle)
ebt00020

Module
ebt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ebt00020]
ebt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ebt00020]
ebt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ebt00020]
ebt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ebt00020]
ebt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ebt00020]
Other DBs
GO: 0006099
Organism
Shimwellia blattae [GN:ebt]
Gene
EBL_c26730  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
EBL_c16240  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
EBL_c32370  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EBL_c23670  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EBL_c26680  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EBL_c26670  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
EBL_c32390  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EBL_c26650  sucD; succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EBL_c26660  sucC; succinyl-CoA synthetase beta chain with ATP-grasp domain [KO:K01903] [EC:6.2.1.5]
EBL_c26700  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EBL_c26690  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
EBL_c26720  sdhC; succinate dehydrogenase [KO:K00241]
EBL_c26710  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
EBL_c35900  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
EBL_c35910  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
EBL_c35920  frdC; fumarate reductase subunit C [KO:K00246]
EBL_c35930  frdD; fumarate reductase subunit D [KO:K00247]
EBL_c22460  fumA1; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
EBL_c34180  fumA2; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
EBL_c22430  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
EBL_c03550  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EBL_c06180  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EBL_c02270  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EBL_c32410  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
EBL_c32400  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
EBL_c19740  ydbK; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ebt00010  Glycolysis / Gluconeogenesis
ebt00053  Ascorbate and aldarate metabolism
ebt00061  Fatty acid biosynthesis
ebt00071  Fatty acid degradation
ebt00190  Oxidative phosphorylation
ebt00220  Arginine biosynthesis
ebt00250  Alanine, aspartate and glutamate metabolism
ebt00280  Valine, leucine and isoleucine degradation
ebt00350  Tyrosine metabolism
ebt00470  D-Amino acid metabolism
ebt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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